Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.720.1 and Xcc-8004.721.1 overlap by 4 nucleotides Xcc-8004.721.1 and Xcc-8004.722.1 overlap by 4 nucleotides Xcc-8004.722.1 and Xcc-8004.723.1 are separated by 189 nucleotides
Xcc-8004.720.1: Xcc-8004.720.1 - putative iron-regulated membrane protein, at 669,886 to 671,508
Xcc-8004.720.1
Xcc-8004.721.1: Xcc-8004.721.1 - putative; ORF located using Glimmer/Genemark, at 671,505 to 671,825
Xcc-8004.721.1
Xcc-8004.722.1: Xcc-8004.722.1 - putative; ORF located using Glimmer/Genemark, at 671,822 to 672,172
Xcc-8004.722.1
Xcc-8004.723.1: Xcc-8004.723.1 - Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 672,362 to 675,175
Xcc-8004.723.1
Position (kb) 671
672
673 Strain fitness (log2 ratio) -2
-1
0
1 at 670.958 kb on - strand, within Xcc-8004.720.1 at 671.071 kb on + strand, within Xcc-8004.720.1 at 671.072 kb on - strand, within Xcc-8004.720.1 at 671.134 kb on + strand, within Xcc-8004.720.1 at 671.134 kb on + strand, within Xcc-8004.720.1 at 671.134 kb on + strand, within Xcc-8004.720.1 at 671.228 kb on + strand, within Xcc-8004.720.1 at 671.228 kb on + strand, within Xcc-8004.720.1 at 671.228 kb on + strand, within Xcc-8004.720.1 at 671.229 kb on - strand, within Xcc-8004.720.1 at 671.229 kb on - strand, within Xcc-8004.720.1 at 671.229 kb on - strand, within Xcc-8004.720.1 at 671.347 kb on + strand at 671.419 kb on + strand at 671.419 kb on + strand at 671.419 kb on + strand at 671.419 kb on + strand at 671.419 kb on + strand at 671.419 kb on + strand at 671.420 kb on - strand at 671.420 kb on - strand at 671.578 kb on + strand, within Xcc-8004.721.1 at 671.579 kb on - strand, within Xcc-8004.721.1 at 671.579 kb on - strand, within Xcc-8004.721.1 at 671.697 kb on + strand, within Xcc-8004.721.1 at 671.697 kb on + strand, within Xcc-8004.721.1 at 671.697 kb on + strand, within Xcc-8004.721.1 at 672.030 kb on + strand, within Xcc-8004.722.1 at 672.030 kb on + strand, within Xcc-8004.722.1 at 672.030 kb on + strand, within Xcc-8004.722.1 at 672.083 kb on + strand, within Xcc-8004.722.1 at 672.083 kb on + strand, within Xcc-8004.722.1 at 672.084 kb on - strand, within Xcc-8004.722.1 at 672.084 kb on - strand, within Xcc-8004.722.1 at 672.196 kb on + strand at 672.282 kb on - strand at 672.492 kb on + strand at 672.696 kb on + strand, within Xcc-8004.723.1 at 672.696 kb on + strand, within Xcc-8004.723.1 at 672.696 kb on + strand, within Xcc-8004.723.1 at 672.696 kb on + strand, within Xcc-8004.723.1 at 672.697 kb on - strand, within Xcc-8004.723.1 at 672.697 kb on - strand, within Xcc-8004.723.1 at 672.893 kb on + strand, within Xcc-8004.723.1 at 672.893 kb on + strand, within Xcc-8004.723.1 at 672.894 kb on - strand, within Xcc-8004.723.1 at 672.894 kb on - strand, within Xcc-8004.723.1 at 672.894 kb on - strand, within Xcc-8004.723.1 at 672.894 kb on - strand, within Xcc-8004.723.1 at 672.899 kb on + strand, within Xcc-8004.723.1 at 673.091 kb on + strand, within Xcc-8004.723.1 at 673.091 kb on + strand, within Xcc-8004.723.1 at 673.092 kb on - strand, within Xcc-8004.723.1 at 673.092 kb on - strand, within Xcc-8004.723.1 at 673.092 kb on - strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days remove 670,958 - Xcc-8004.720.1 0.66 +0.8 671,071 + Xcc-8004.720.1 0.73 +0.3 671,072 - Xcc-8004.720.1 0.73 +1.0 671,134 + Xcc-8004.720.1 0.77 +0.0 671,134 + Xcc-8004.720.1 0.77 -1.0 671,134 + Xcc-8004.720.1 0.77 +0.5 671,228 + Xcc-8004.720.1 0.83 -1.7 671,228 + Xcc-8004.720.1 0.83 +0.2 671,228 + Xcc-8004.720.1 0.83 +0.1 671,229 - Xcc-8004.720.1 0.83 -0.3 671,229 - Xcc-8004.720.1 0.83 -1.1 671,229 - Xcc-8004.720.1 0.83 +0.7 671,347 + +0.4 671,419 + +1.6 671,419 + +0.2 671,419 + -1.0 671,419 + -0.5 671,419 + +0.9 671,419 + -0.1 671,420 - -0.2 671,420 - -0.3 671,578 + Xcc-8004.721.1 0.23 +0.5 671,579 - Xcc-8004.721.1 0.23 +0.4 671,579 - Xcc-8004.721.1 0.23 -0.1 671,697 + Xcc-8004.721.1 0.60 +0.1 671,697 + Xcc-8004.721.1 0.60 +0.1 671,697 + Xcc-8004.721.1 0.60 +1.1 672,030 + Xcc-8004.722.1 0.59 -1.8 672,030 + Xcc-8004.722.1 0.59 -0.9 672,030 + Xcc-8004.722.1 0.59 -1.2 672,083 + Xcc-8004.722.1 0.74 +0.1 672,083 + Xcc-8004.722.1 0.74 +0.1 672,084 - Xcc-8004.722.1 0.75 -0.9 672,084 - Xcc-8004.722.1 0.75 -1.2 672,196 + +1.0 672,282 - +1.4 672,492 + +0.3 672,696 + Xcc-8004.723.1 0.12 -1.4 672,696 + Xcc-8004.723.1 0.12 -0.3 672,696 + Xcc-8004.723.1 0.12 -1.6 672,696 + Xcc-8004.723.1 0.12 +0.3 672,697 - Xcc-8004.723.1 0.12 -0.5 672,697 - Xcc-8004.723.1 0.12 +0.2 672,893 + Xcc-8004.723.1 0.19 +0.3 672,893 + Xcc-8004.723.1 0.19 -0.6 672,894 - Xcc-8004.723.1 0.19 -1.2 672,894 - Xcc-8004.723.1 0.19 +0.6 672,894 - Xcc-8004.723.1 0.19 -1.1 672,894 - Xcc-8004.723.1 0.19 -0.8 672,899 + Xcc-8004.723.1 0.19 -1.4 673,091 + Xcc-8004.723.1 0.26 +0.2 673,091 + Xcc-8004.723.1 0.26 -0.9 673,092 - Xcc-8004.723.1 0.26 +0.4 673,092 - Xcc-8004.723.1 0.26 -0.2 673,092 - Xcc-8004.723.1 0.26 -0.6 673,124 + Xcc-8004.723.1 0.27 -0.5 673,124 + Xcc-8004.723.1 0.27 +0.8 673,124 + Xcc-8004.723.1 0.27 -0.0 673,124 + Xcc-8004.723.1 0.27 -0.4 673,124 + Xcc-8004.723.1 0.27 -0.8
Or see this region's nucleotide sequence