Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1528 and HP15_1529 are separated by 42 nucleotides HP15_1529 and HP15_1530 are separated by 39 nucleotides HP15_1530 and HP15_1531 are separated by 3 nucleotides
HP15_1528: HP15_1528 - chromosome segregation and condensation protein ScpA, at 1,610,053 to 1,610,886
_1528
HP15_1529: HP15_1529 - transcriptional regulator, at 1,610,929 to 1,611,567
_1529
HP15_1530: HP15_1530 - RNA-binding S4 domain protein, at 1,611,607 to 1,612,590
_1530
HP15_1531: HP15_1531 - diguanylate cyclase (GGDEF domain), at 1,612,594 to 1,613,520
_1531
Position (kb)
1611
1612
1613 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1610.798 kb on + strand, within HP15_1528 at 1610.808 kb on + strand at 1610.946 kb on + strand at 1611.074 kb on - strand, within HP15_1529 at 1611.316 kb on + strand, within HP15_1529 at 1611.366 kb on - strand, within HP15_1529 at 1611.643 kb on + strand at 1611.676 kb on - strand at 1611.853 kb on + strand, within HP15_1530 at 1611.853 kb on + strand, within HP15_1530 at 1611.911 kb on + strand, within HP15_1530 at 1612.092 kb on - strand, within HP15_1530 at 1612.587 kb on - strand at 1612.587 kb on - strand at 1612.624 kb on + strand at 1612.624 kb on + strand at 1612.630 kb on + strand at 1612.638 kb on - strand at 1612.678 kb on + strand at 1612.791 kb on + strand, within HP15_1531 at 1612.812 kb on + strand, within HP15_1531 at 1612.932 kb on + strand, within HP15_1531 at 1612.966 kb on - strand, within HP15_1531 at 1612.966 kb on - strand, within HP15_1531 at 1612.966 kb on - strand, within HP15_1531 at 1613.205 kb on + strand, within HP15_1531 at 1613.247 kb on + strand, within HP15_1531 at 1613.264 kb on - strand, within HP15_1531 at 1613.266 kb on + strand, within HP15_1531 at 1613.357 kb on - strand, within HP15_1531
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 1,610,798 + HP15_1528 0.89 -1.2 1,610,808 + -0.1 1,610,946 + -2.0 1,611,074 - HP15_1529 0.23 +0.5 1,611,316 + HP15_1529 0.61 -1.0 1,611,366 - HP15_1529 0.68 -3.9 1,611,643 + -2.2 1,611,676 - -2.5 1,611,853 + HP15_1530 0.25 -3.4 1,611,853 + HP15_1530 0.25 -2.0 1,611,911 + HP15_1530 0.31 -2.5 1,612,092 - HP15_1530 0.49 -3.5 1,612,587 - +0.2 1,612,587 - +0.5 1,612,624 + -1.2 1,612,624 + +0.9 1,612,630 + +0.0 1,612,638 - -1.9 1,612,678 + +0.5 1,612,791 + HP15_1531 0.21 -0.5 1,612,812 + HP15_1531 0.24 +0.0 1,612,932 + HP15_1531 0.36 -0.8 1,612,966 - HP15_1531 0.40 -1.0 1,612,966 - HP15_1531 0.40 +0.3 1,612,966 - HP15_1531 0.40 +0.1 1,613,205 + HP15_1531 0.66 -0.4 1,613,247 + HP15_1531 0.70 -0.1 1,613,264 - HP15_1531 0.72 +0.2 1,613,266 + HP15_1531 0.72 -1.0 1,613,357 - HP15_1531 0.82 -0.1
Or see this region's nucleotide sequence