Strain Fitness in Marinobacter adhaerens HP15 around HP15_1470

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1468 and HP15_1469 are separated by 18 nucleotidesHP15_1469 and HP15_1470 are separated by 27 nucleotidesHP15_1470 and HP15_1471 are separated by 76 nucleotidesHP15_1471 and HP15_1472 are separated by 82 nucleotides HP15_1468: HP15_1468 - flagellar basal-body rod protein FlgC-like protein, at 1,543,023 to 1,543,472 _1468 HP15_1469: HP15_1469 - flagellar hook capping protein, at 1,543,491 to 1,544,168 _1469 HP15_1470: HP15_1470 - flagellar hook protein FlgE, at 1,544,196 to 1,546,094 _1470 HP15_1471: HP15_1471 - flagellar basal-body rod FlgF, at 1,546,171 to 1,546,923 _1471 HP15_1472: HP15_1472 - flagellar basal-body rod protein FlgG, at 1,547,006 to 1,547,794 _1472 Position (kb) 1544 1545 1546 1547Strain fitness (log2 ratio) -2 -1 0 1at 1543.269 kb on - strand, within HP15_1468at 1543.284 kb on + strand, within HP15_1468at 1543.304 kb on + strand, within HP15_1468at 1543.433 kb on + strandat 1543.464 kb on - strandat 1543.578 kb on - strand, within HP15_1469at 1543.679 kb on + strand, within HP15_1469at 1543.687 kb on + strand, within HP15_1469at 1543.687 kb on - strand, within HP15_1469at 1543.687 kb on - strand, within HP15_1469at 1543.737 kb on - strand, within HP15_1469at 1543.739 kb on + strand, within HP15_1469at 1543.885 kb on - strand, within HP15_1469at 1544.078 kb on - strand, within HP15_1469at 1544.088 kb on - strand, within HP15_1469at 1544.194 kb on - strandat 1544.281 kb on - strandat 1544.281 kb on - strandat 1544.360 kb on - strandat 1544.383 kb on + strandat 1544.395 kb on + strand, within HP15_1470at 1544.395 kb on + strand, within HP15_1470at 1544.403 kb on - strand, within HP15_1470at 1544.403 kb on - strand, within HP15_1470at 1544.430 kb on + strand, within HP15_1470at 1544.500 kb on + strand, within HP15_1470at 1544.562 kb on + strand, within HP15_1470at 1544.564 kb on + strand, within HP15_1470at 1544.572 kb on - strand, within HP15_1470at 1544.670 kb on - strand, within HP15_1470at 1544.766 kb on - strand, within HP15_1470at 1545.108 kb on - strand, within HP15_1470at 1545.111 kb on + strand, within HP15_1470at 1545.131 kb on - strand, within HP15_1470at 1545.292 kb on - strand, within HP15_1470at 1545.366 kb on + strand, within HP15_1470at 1545.403 kb on + strand, within HP15_1470at 1545.473 kb on + strand, within HP15_1470at 1545.479 kb on - strand, within HP15_1470at 1545.505 kb on - strand, within HP15_1470at 1545.626 kb on - strand, within HP15_1470at 1545.687 kb on + strand, within HP15_1470at 1545.692 kb on - strand, within HP15_1470at 1545.746 kb on + strand, within HP15_1470at 1545.746 kb on + strand, within HP15_1470at 1545.806 kb on + strand, within HP15_1470at 1545.813 kb on + strand, within HP15_1470at 1545.956 kb on - strandat 1545.993 kb on + strandat 1546.005 kb on - strandat 1546.073 kb on - strandat 1546.084 kb on + strandat 1546.238 kb on - strandat 1546.290 kb on + strand, within HP15_1471at 1546.291 kb on + strand, within HP15_1471at 1546.332 kb on + strand, within HP15_1471at 1546.383 kb on + strand, within HP15_1471at 1546.391 kb on - strand, within HP15_1471at 1546.429 kb on - strand, within HP15_1471at 1546.572 kb on - strand, within HP15_1471at 1546.647 kb on + strand, within HP15_1471at 1546.660 kb on - strand, within HP15_1471at 1546.670 kb on - strand, within HP15_1471at 1546.693 kb on + strand, within HP15_1471at 1546.694 kb on + strand, within HP15_1471at 1546.701 kb on - strand, within HP15_1471at 1546.828 kb on - strand, within HP15_1471at 1546.836 kb on - strand, within HP15_1471at 1546.925 kb on - strandat 1546.928 kb on + strandat 1546.959 kb on - strandat 1547.010 kb on + strandat 1547.022 kb on + strandat 1547.089 kb on + strand, within HP15_1472

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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1,543,269 - HP15_1468 0.55 -1.6
1,543,284 + HP15_1468 0.58 -1.4
1,543,304 + HP15_1468 0.62 -0.0
1,543,433 + -0.8
1,543,464 - -1.6
1,543,578 - HP15_1469 0.13 -2.6
1,543,679 + HP15_1469 0.28 -1.3
1,543,687 + HP15_1469 0.29 -1.9
1,543,687 - HP15_1469 0.29 -2.1
1,543,687 - HP15_1469 0.29 -0.9
1,543,737 - HP15_1469 0.36 -2.3
1,543,739 + HP15_1469 0.37 -1.3
1,543,885 - HP15_1469 0.58 -1.5
1,544,078 - HP15_1469 0.87 -1.0
1,544,088 - HP15_1469 0.88 -1.4
1,544,194 - -1.1
1,544,281 - -1.4
1,544,281 - -1.6
1,544,360 - -1.3
1,544,383 + -2.6
1,544,395 + HP15_1470 0.10 -1.0
1,544,395 + HP15_1470 0.10 -1.8
1,544,403 - HP15_1470 0.11 -1.5
1,544,403 - HP15_1470 0.11 -0.9
1,544,430 + HP15_1470 0.12 +0.7
1,544,500 + HP15_1470 0.16 -0.6
1,544,562 + HP15_1470 0.19 -2.3
1,544,564 + HP15_1470 0.19 -1.3
1,544,572 - HP15_1470 0.20 -1.5
1,544,670 - HP15_1470 0.25 -1.1
1,544,766 - HP15_1470 0.30 -0.8
1,545,108 - HP15_1470 0.48 -1.7
1,545,111 + HP15_1470 0.48 +0.4
1,545,131 - HP15_1470 0.49 -1.2
1,545,292 - HP15_1470 0.58 -1.0
1,545,366 + HP15_1470 0.62 -1.7
1,545,403 + HP15_1470 0.64 -0.9
1,545,473 + HP15_1470 0.67 -1.0
1,545,479 - HP15_1470 0.68 -1.1
1,545,505 - HP15_1470 0.69 -0.9
1,545,626 - HP15_1470 0.75 -1.4
1,545,687 + HP15_1470 0.79 -0.9
1,545,692 - HP15_1470 0.79 -1.3
1,545,746 + HP15_1470 0.82 -1.8
1,545,746 + HP15_1470 0.82 -0.3
1,545,806 + HP15_1470 0.85 -1.6
1,545,813 + HP15_1470 0.85 -2.2
1,545,956 - -2.4
1,545,993 + -1.3
1,546,005 - -0.1
1,546,073 - -2.6
1,546,084 + -0.7
1,546,238 - -0.0
1,546,290 + HP15_1471 0.16 -1.1
1,546,291 + HP15_1471 0.16 -1.3
1,546,332 + HP15_1471 0.21 -1.4
1,546,383 + HP15_1471 0.28 -1.5
1,546,391 - HP15_1471 0.29 -1.4
1,546,429 - HP15_1471 0.34 -1.0
1,546,572 - HP15_1471 0.53 -1.4
1,546,647 + HP15_1471 0.63 -1.2
1,546,660 - HP15_1471 0.65 -1.7
1,546,670 - HP15_1471 0.66 -1.9
1,546,693 + HP15_1471 0.69 -1.1
1,546,694 + HP15_1471 0.69 -1.1
1,546,701 - HP15_1471 0.70 -1.5
1,546,828 - HP15_1471 0.87 -2.7
1,546,836 - HP15_1471 0.88 -1.3
1,546,925 - -1.2
1,546,928 + -0.3
1,546,959 - -1.2
1,547,010 + -1.5
1,547,022 + -1.5
1,547,089 + HP15_1472 0.11 -2.2

Or see this region's nucleotide sequence