Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03120 and ECD_03121 are separated by 83 nucleotides ECD_03121 and ECD_03122 are separated by 2 nucleotides
ECD_03120: ECD_03120 - DNA adenine methyltransferase, SAM-dependent, at 3,272,809 to 3,273,693
_03120
ECD_03121: ECD_03121 - putative membrane protein, at 3,273,777 to 3,273,956
_03121
ECD_03122: ECD_03122 - acrAB operon transcriptional repressor, at 3,273,959 to 3,274,621
_03122
Position (kb)
3273
3274 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3272.895 kb on - strand at 3272.895 kb on - strand at 3272.899 kb on - strand, within ECD_03120 at 3272.936 kb on - strand, within ECD_03120 at 3273.055 kb on + strand, within ECD_03120 at 3273.055 kb on + strand, within ECD_03120 at 3273.061 kb on - strand, within ECD_03120 at 3273.115 kb on - strand, within ECD_03120 at 3273.143 kb on - strand, within ECD_03120 at 3273.187 kb on + strand, within ECD_03120 at 3273.187 kb on + strand, within ECD_03120 at 3273.188 kb on - strand, within ECD_03120 at 3273.188 kb on - strand, within ECD_03120 at 3273.188 kb on - strand, within ECD_03120 at 3273.226 kb on + strand, within ECD_03120 at 3273.227 kb on - strand, within ECD_03120 at 3273.316 kb on + strand, within ECD_03120 at 3273.317 kb on - strand, within ECD_03120 at 3273.317 kb on - strand, within ECD_03120 at 3273.367 kb on + strand, within ECD_03120 at 3273.371 kb on + strand, within ECD_03120 at 3273.593 kb on - strand, within ECD_03120 at 3273.734 kb on - strand at 3273.833 kb on + strand, within ECD_03121 at 3274.327 kb on - strand, within ECD_03122 at 3274.477 kb on - strand, within ECD_03122 at 3274.536 kb on - strand, within ECD_03122 at 3274.872 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 3,272,895 - +0.8 3,272,895 - +0.7 3,272,899 - ECD_03120 0.10 +0.3 3,272,936 - ECD_03120 0.14 +1.8 3,273,055 + ECD_03120 0.28 +0.6 3,273,055 + ECD_03120 0.28 -2.0 3,273,061 - ECD_03120 0.28 +1.2 3,273,115 - ECD_03120 0.35 +0.2 3,273,143 - ECD_03120 0.38 +0.9 3,273,187 + ECD_03120 0.43 +0.7 3,273,187 + ECD_03120 0.43 -0.7 3,273,188 - ECD_03120 0.43 +0.8 3,273,188 - ECD_03120 0.43 +0.0 3,273,188 - ECD_03120 0.43 -0.2 3,273,226 + ECD_03120 0.47 -0.6 3,273,227 - ECD_03120 0.47 +0.5 3,273,316 + ECD_03120 0.57 -1.2 3,273,317 - ECD_03120 0.57 +0.8 3,273,317 - ECD_03120 0.57 +1.0 3,273,367 + ECD_03120 0.63 -1.2 3,273,371 + ECD_03120 0.64 -1.2 3,273,593 - ECD_03120 0.89 +0.3 3,273,734 - +0.6 3,273,833 + ECD_03121 0.31 -1.2 3,274,327 - ECD_03122 0.56 +0.0 3,274,477 - ECD_03122 0.78 +1.1 3,274,536 - ECD_03122 0.87 -0.2 3,274,872 + -1.9
Or see this region's nucleotide sequence