Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02620 and ECD_02621 are separated by 634 nucleotides ECD_02621 and ECD_02622 are separated by 317 nucleotides
ECD_02620: ECD_02620 - putative kinase, at 2,734,057 to 2,735,535
_02620
ECD_02621: ECD_02621 - hypothetical protein, at 2,736,170 to 2,737,018
_02621
ECD_02622: ECD_02622 - 7-carboxy-7-deazaguanine synthase; queosine biosynthesis, at 2,737,336 to 2,738,007
_02622
Position (kb)
2736
2737
2738 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2735.301 kb on + strand, within ECD_02620 at 2735.302 kb on - strand, within ECD_02620 at 2735.370 kb on + strand, within ECD_02620 at 2735.371 kb on - strand, within ECD_02620 at 2735.371 kb on - strand, within ECD_02620 at 2735.377 kb on - strand, within ECD_02620 at 2735.404 kb on + strand at 2735.448 kb on + strand at 2735.448 kb on + strand at 2735.448 kb on + strand at 2735.448 kb on + strand at 2735.448 kb on + strand at 2735.449 kb on - strand at 2735.449 kb on - strand at 2735.575 kb on - strand at 2735.610 kb on - strand at 2735.610 kb on - strand at 2735.610 kb on - strand at 2735.610 kb on - strand at 2736.167 kb on + strand at 2736.169 kb on + strand at 2736.476 kb on - strand, within ECD_02621 at 2736.477 kb on + strand, within ECD_02621 at 2736.632 kb on + strand, within ECD_02621 at 2736.633 kb on - strand, within ECD_02621 at 2736.633 kb on - strand, within ECD_02621 at 2736.634 kb on + strand, within ECD_02621 at 2736.634 kb on + strand, within ECD_02621 at 2736.756 kb on + strand, within ECD_02621 at 2736.757 kb on - strand, within ECD_02621 at 2736.876 kb on - strand, within ECD_02621 at 2736.877 kb on + strand, within ECD_02621 at 2737.047 kb on + strand at 2737.324 kb on - strand at 2737.352 kb on + strand at 2737.356 kb on + strand at 2737.356 kb on + strand at 2737.487 kb on - strand, within ECD_02622 at 2737.634 kb on - strand, within ECD_02622 at 2737.668 kb on + strand, within ECD_02622 at 2737.813 kb on - strand, within ECD_02622 at 2737.813 kb on - strand, within ECD_02622 at 2738.008 kb on - strand at 2738.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,735,301 + ECD_02620 0.84 -0.7 2,735,302 - ECD_02620 0.84 -0.2 2,735,370 + ECD_02620 0.89 -0.3 2,735,371 - ECD_02620 0.89 +3.3 2,735,371 - ECD_02620 0.89 -1.9 2,735,377 - ECD_02620 0.89 -0.7 2,735,404 + -1.1 2,735,448 + +0.3 2,735,448 + -1.7 2,735,448 + -1.5 2,735,448 + -1.3 2,735,448 + -2.5 2,735,449 - -2.2 2,735,449 - -1.0 2,735,575 - -0.9 2,735,610 - +0.2 2,735,610 - -2.1 2,735,610 - -0.0 2,735,610 - +3.6 2,736,167 + -0.6 2,736,169 + -0.5 2,736,476 - ECD_02621 0.36 -0.6 2,736,477 + ECD_02621 0.36 -0.6 2,736,632 + ECD_02621 0.54 -1.4 2,736,633 - ECD_02621 0.55 -1.1 2,736,633 - ECD_02621 0.55 -0.8 2,736,634 + ECD_02621 0.55 +0.2 2,736,634 + ECD_02621 0.55 -2.3 2,736,756 + ECD_02621 0.69 -1.2 2,736,757 - ECD_02621 0.69 +0.4 2,736,876 - ECD_02621 0.83 -2.4 2,736,877 + ECD_02621 0.83 -0.2 2,737,047 + +0.2 2,737,324 - +0.1 2,737,352 + +0.4 2,737,356 + -1.6 2,737,356 + +1.1 2,737,487 - ECD_02622 0.22 -1.2 2,737,634 - ECD_02622 0.44 -0.5 2,737,668 + ECD_02622 0.49 -0.6 2,737,813 - ECD_02622 0.71 -3.3 2,737,813 - ECD_02622 0.71 -0.2 2,738,008 - -1.8 2,738,008 - +4.6
Or see this region's nucleotide sequence