Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01627 and ECD_01628 are separated by 165 nucleotides ECD_01628 and ECD_01629 are separated by 268 nucleotides ECD_01629 and ECD_01630 overlap by 4 nucleotides
ECD_01627: ECD_01627 - putative MFS transporter, inner membrane protein, at 1,681,390 to 1,682,559
_01627
ECD_01628: ECD_01628 - putative transporter, at 1,682,725 to 1,682,844
_01628
ECD_01629: ECD_01629 - transcriptional repressor, hypoxanthine-binding, at 1,683,113 to 1,684,138
_01629
ECD_01630: ECD_01630 - LysR family putative transcriptional regulator, at 1,684,135 to 1,685,067
_01630
Position (kb) 1683
1684
1685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1682.283 kb on - strand, within ECD_01627 at 1682.958 kb on + strand at 1682.963 kb on + strand at 1683.132 kb on + strand at 1683.132 kb on + strand at 1683.132 kb on + strand at 1683.157 kb on + strand at 1683.712 kb on + strand, within ECD_01629 at 1683.712 kb on + strand, within ECD_01629 at 1684.504 kb on - strand, within ECD_01630 at 1684.504 kb on - strand, within ECD_01630 at 1684.750 kb on - strand, within ECD_01630
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 1,682,283 - ECD_01627 0.76 +0.7 1,682,958 + -1.7 1,682,963 + -3.4 1,683,132 + -0.9 1,683,132 + -2.6 1,683,132 + -0.5 1,683,157 + +0.1 1,683,712 + ECD_01629 0.58 -1.1 1,683,712 + ECD_01629 0.58 -2.7 1,684,504 - ECD_01630 0.40 +2.0 1,684,504 - ECD_01630 0.40 +1.4 1,684,750 - ECD_01630 0.66 +1.2
Or see this region's nucleotide sequence