Strain Fitness in Escherichia coli BL21 around ECD_01779

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01778 and ECD_01779 are separated by 131 nucleotidesECD_01779 and ECD_01780 are separated by 422 nucleotidesECD_01780 and ECD_01781 are separated by 119 nucleotides ECD_01778: ECD_01778 - putative ATP-dependent helicase, DinG family, at 1,837,051 to 1,838,961 _01778 ECD_01779: ECD_01779 - putative reactive intermediate deaminase, at 1,839,093 to 1,839,437 _01779 ECD_01780: ECD_01780 - DUF1889 family protein, at 1,839,860 to 1,840,159 _01780 ECD_01781: ECD_01781 - UPF0181 family protein, at 1,840,279 to 1,840,458 _01781 Position (kb) 1839 1840Strain fitness (log2 ratio) -1 0 1 2at 1838.991 kb on - strandat 1839.159 kb on + strand, within ECD_01779at 1839.159 kb on + strand, within ECD_01779at 1839.673 kb on + strandat 1839.820 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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1,838,991 - -0.1
1,839,159 + ECD_01779 0.19 -0.9
1,839,159 + ECD_01779 0.19 -0.5
1,839,673 + +1.8
1,839,820 + -0.4

Or see this region's nucleotide sequence