Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01432 and ECD_01433 are separated by 12 nucleotides ECD_01433 and ECD_01434 overlap by 8 nucleotides ECD_01434 and ECD_01435 are separated by 194 nucleotides ECD_01435 and ECD_01436 are separated by 145 nucleotides
ECD_01432: ECD_01432 - formate dehydrogenase-N, alpha subunit, nitrate-inducible, at 1,503,081 to 1,506,128
_01432
ECD_01433: ECD_01433 - formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible, at 1,506,141 to 1,507,025
_01433
ECD_01434: ECD_01434 - formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible, at 1,507,018 to 1,507,671
_01434
ECD_01435: ECD_01435 - putative DNA-binding transcriptional regulator, at 1,507,866 to 1,508,150
_01435
ECD_01436: ECD_01436 - ethanol-active dehydrogenase/acetaldehyde-active reductase, at 1,508,296 to 1,509,306
_01436
Position (kb) 1507
1508 Strain fitness (log2 ratio) -1
0
1 at 1506.612 kb on + strand, within ECD_01433 at 1507.342 kb on + strand, within ECD_01434 at 1507.528 kb on + strand, within ECD_01434 at 1507.529 kb on - strand, within ECD_01434 at 1507.989 kb on - strand, within ECD_01435 at 1508.091 kb on - strand, within ECD_01435 at 1508.593 kb on - strand, within ECD_01436
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,506,612 + ECD_01433 0.53 +0.0 1,507,342 + ECD_01434 0.50 -1.0 1,507,528 + ECD_01434 0.78 -0.3 1,507,529 - ECD_01434 0.78 -0.1 1,507,989 - ECD_01435 0.43 +0.7 1,508,091 - ECD_01435 0.79 +0.1 1,508,593 - ECD_01436 0.29 -1.1
Or see this region's nucleotide sequence