Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00398 and ECD_00399 are separated by 152 nucleotides ECD_00399 and ECD_00400 are separated by 29 nucleotides
ECD_00398: ECD_00398 - thiamine pyrimidine pyrophosphate hydrolase; HMP-PP phosphatase, at 436,458 to 437,276
_00398
ECD_00399: ECD_00399 - putative DNA-binding transcriptional regulator, at 437,429 to 437,887
_00399
ECD_00400: ECD_00400 - putative multidrug ABC transporter ATPase, at 437,917 to 439,689
_00400
Position (kb) 437
438 Strain fitness (log2 ratio) -1
0
1 at 436.517 kb on - strand at 436.639 kb on - strand, within ECD_00398 at 436.691 kb on - strand, within ECD_00398 at 436.705 kb on + strand, within ECD_00398 at 436.767 kb on - strand, within ECD_00398 at 436.923 kb on - strand, within ECD_00398 at 436.944 kb on + strand, within ECD_00398 at 436.944 kb on + strand, within ECD_00398 at 437.021 kb on + strand, within ECD_00398 at 437.063 kb on - strand, within ECD_00398 at 437.138 kb on + strand, within ECD_00398 at 437.139 kb on - strand, within ECD_00398 at 437.227 kb on - strand at 437.257 kb on + strand at 437.257 kb on + strand at 437.258 kb on - strand at 437.258 kb on - strand at 437.260 kb on - strand at 437.736 kb on - strand, within ECD_00399 at 437.741 kb on + strand, within ECD_00399 at 437.742 kb on - strand, within ECD_00399 at 437.789 kb on + strand, within ECD_00399 at 437.861 kb on + strand at 437.936 kb on + strand at 437.936 kb on + strand at 437.936 kb on + strand at 437.968 kb on + strand at 437.969 kb on - strand at 438.036 kb on + strand at 438.069 kb on + strand at 438.140 kb on - strand, within ECD_00400 at 438.215 kb on + strand, within ECD_00400 at 438.215 kb on + strand, within ECD_00400 at 438.401 kb on + strand, within ECD_00400 at 438.504 kb on + strand, within ECD_00400 at 438.603 kb on + strand, within ECD_00400 at 438.661 kb on + strand, within ECD_00400 at 438.661 kb on + strand, within ECD_00400 at 438.662 kb on - strand, within ECD_00400 at 438.763 kb on + strand, within ECD_00400 at 438.763 kb on + strand, within ECD_00400 at 438.763 kb on + strand, within ECD_00400 at 438.767 kb on + strand, within ECD_00400 at 438.828 kb on + strand, within ECD_00400
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 436,517 - +0.3 436,639 - ECD_00398 0.22 +0.4 436,691 - ECD_00398 0.28 +0.1 436,705 + ECD_00398 0.30 +0.1 436,767 - ECD_00398 0.38 -0.2 436,923 - ECD_00398 0.57 +0.0 436,944 + ECD_00398 0.59 -0.0 436,944 + ECD_00398 0.59 +0.4 437,021 + ECD_00398 0.69 -0.0 437,063 - ECD_00398 0.74 -0.4 437,138 + ECD_00398 0.83 -1.7 437,139 - ECD_00398 0.83 -0.2 437,227 - +0.3 437,257 + -0.1 437,257 + +0.2 437,258 - +0.0 437,258 - +0.3 437,260 - +0.4 437,736 - ECD_00399 0.67 +0.1 437,741 + ECD_00399 0.68 -0.7 437,742 - ECD_00399 0.68 -0.2 437,789 + ECD_00399 0.78 -1.1 437,861 + -1.0 437,936 + +0.4 437,936 + +0.1 437,936 + +0.5 437,968 + +0.7 437,969 - -0.3 438,036 + +0.4 438,069 + +0.4 438,140 - ECD_00400 0.13 -1.6 438,215 + ECD_00400 0.17 -0.4 438,215 + ECD_00400 0.17 +0.6 438,401 + ECD_00400 0.27 +0.5 438,504 + ECD_00400 0.33 -1.1 438,603 + ECD_00400 0.39 +0.2 438,661 + ECD_00400 0.42 +1.7 438,661 + ECD_00400 0.42 -0.9 438,662 - ECD_00400 0.42 -0.0 438,763 + ECD_00400 0.48 +0.8 438,763 + ECD_00400 0.48 +0.2 438,763 + ECD_00400 0.48 -0.1 438,767 + ECD_00400 0.48 +0.3 438,828 + ECD_00400 0.51 +0.8
Or see this region's nucleotide sequence