Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00351 and ECD_00352 are separated by 4 nucleotides ECD_00352 and ECD_00353 are separated by 92 nucleotides ECD_00353 and ECD_00354 are separated by 55 nucleotides
ECD_00351: ECD_00351 - maltodextrin glucosidase, at 387,917 to 389,734
_00351
ECD_00352: ECD_00352 - acyl carrier protein (ACP) phosphodiesterase; ACP hydrolyase, at 389,739 to 390,320
_00352
ECD_00353: ECD_00353 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 390,413 to 391,483
_00353
ECD_00354: ECD_00354 - tRNA-guanine transglycosylase, at 391,539 to 392,666
_00354
Position (kb) 390
391
392 Strain fitness (log2 ratio) -2
-1
0
1 at 389.440 kb on + strand, within ECD_00351 at 389.459 kb on + strand, within ECD_00351 at 389.525 kb on + strand, within ECD_00351 at 389.526 kb on - strand, within ECD_00351 at 389.537 kb on - strand, within ECD_00351 at 389.733 kb on - strand at 389.740 kb on + strand at 389.945 kb on - strand, within ECD_00352 at 390.099 kb on - strand, within ECD_00352 at 390.172 kb on - strand, within ECD_00352 at 390.172 kb on - strand, within ECD_00352 at 390.172 kb on - strand, within ECD_00352 at 390.191 kb on + strand, within ECD_00352 at 390.191 kb on + strand, within ECD_00352 at 390.192 kb on - strand, within ECD_00352 at 390.192 kb on - strand, within ECD_00352 at 390.192 kb on - strand, within ECD_00352 at 390.259 kb on - strand, within ECD_00352 at 390.294 kb on + strand at 390.326 kb on - strand at 390.327 kb on + strand at 390.327 kb on + strand at 390.332 kb on + strand at 390.332 kb on + strand at 390.484 kb on + strand at 390.536 kb on - strand, within ECD_00353 at 390.866 kb on + strand, within ECD_00353 at 390.866 kb on + strand, within ECD_00353 at 391.186 kb on - strand, within ECD_00353 at 391.261 kb on + strand, within ECD_00353 at 391.337 kb on - strand, within ECD_00353 at 391.438 kb on + strand at 391.445 kb on + strand at 391.445 kb on + strand at 391.462 kb on + strand at 391.526 kb on + strand at 391.526 kb on + strand at 391.844 kb on + strand, within ECD_00354 at 391.974 kb on - strand, within ECD_00354 at 392.119 kb on + strand, within ECD_00354 at 392.207 kb on + strand, within ECD_00354 at 392.230 kb on + strand, within ECD_00354 at 392.230 kb on + strand, within ECD_00354 at 392.230 kb on + strand, within ECD_00354 at 392.409 kb on + strand, within ECD_00354 at 392.411 kb on + strand, within ECD_00354 at 392.411 kb on + strand, within ECD_00354 at 392.451 kb on + strand, within ECD_00354 at 392.451 kb on + strand, within ECD_00354 at 392.478 kb on + strand, within ECD_00354 at 392.478 kb on + strand, within ECD_00354
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 389,440 + ECD_00351 0.84 +0.8 389,459 + ECD_00351 0.85 -0.5 389,525 + ECD_00351 0.88 -1.9 389,526 - ECD_00351 0.89 +0.2 389,537 - ECD_00351 0.89 +1.0 389,733 - -0.4 389,740 + -0.5 389,945 - ECD_00352 0.35 -0.6 390,099 - ECD_00352 0.62 +0.2 390,172 - ECD_00352 0.74 +0.8 390,172 - ECD_00352 0.74 -0.4 390,172 - ECD_00352 0.74 +0.3 390,191 + ECD_00352 0.78 +0.1 390,191 + ECD_00352 0.78 -0.0 390,192 - ECD_00352 0.78 -0.0 390,192 - ECD_00352 0.78 +1.1 390,192 - ECD_00352 0.78 -0.2 390,259 - ECD_00352 0.89 +0.7 390,294 + -0.3 390,326 - -0.9 390,327 + +0.0 390,327 + -0.7 390,332 + -0.5 390,332 + -0.6 390,484 + -0.6 390,536 - ECD_00353 0.11 +0.6 390,866 + ECD_00353 0.42 -0.6 390,866 + ECD_00353 0.42 -2.0 391,186 - ECD_00353 0.72 +1.5 391,261 + ECD_00353 0.79 -1.3 391,337 - ECD_00353 0.86 -0.2 391,438 + -1.0 391,445 + -0.7 391,445 + +1.3 391,462 + -0.4 391,526 + -0.1 391,526 + +0.3 391,844 + ECD_00354 0.27 +1.1 391,974 - ECD_00354 0.39 +0.1 392,119 + ECD_00354 0.51 -1.7 392,207 + ECD_00354 0.59 +0.5 392,230 + ECD_00354 0.61 +0.1 392,230 + ECD_00354 0.61 +0.3 392,230 + ECD_00354 0.61 -1.7 392,409 + ECD_00354 0.77 +0.5 392,411 + ECD_00354 0.77 +1.7 392,411 + ECD_00354 0.77 -0.7 392,451 + ECD_00354 0.81 -2.1 392,451 + ECD_00354 0.81 -2.2 392,478 + ECD_00354 0.83 +0.1 392,478 + ECD_00354 0.83 -0.1
Or see this region's nucleotide sequence