Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00052 and ECD_00053 are separated by 77 nucleotides ECD_00053 and ECD_00054 are separated by 6 nucleotides ECD_00054 and ECD_00055 are separated by 2 nucleotides ECD_00055 and ECD_00056 overlap by 4 nucleotides
ECD_00052: ECD_00052 - dihydrofolate reductase, at 54,019 to 54,498
_00052
ECD_00053: ECD_00053 - diadenosine tetraphosphatase, at 54,576 to 55,418
_00053
ECD_00054: ECD_00054 - protein associated with Co2+ and Mg2+ efflux, at 55,425 to 55,802
_00054
ECD_00055: ECD_00055 - 16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM-dependent, at 55,805 to 56,626
_00055
ECD_00056: ECD_00056 - 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent, at 56,623 to 57,612
_00056
Position (kb) 55
56 Strain fitness (log2 ratio) -2
-1
0
1 at 54.561 kb on + strand at 54.562 kb on - strand at 54.562 kb on - strand at 54.605 kb on + strand at 54.606 kb on - strand at 54.632 kb on - strand at 54.700 kb on - strand, within ECD_00053 at 54.701 kb on + strand, within ECD_00053 at 54.701 kb on + strand, within ECD_00053 at 54.702 kb on - strand, within ECD_00053 at 54.835 kb on + strand, within ECD_00053 at 54.879 kb on - strand, within ECD_00053 at 54.952 kb on + strand, within ECD_00053 at 54.957 kb on - strand, within ECD_00053 at 54.957 kb on - strand, within ECD_00053 at 55.242 kb on + strand, within ECD_00053 at 55.243 kb on - strand, within ECD_00053 at 55.356 kb on - strand at 55.404 kb on - strand at 55.409 kb on - strand at 55.558 kb on + strand, within ECD_00054 at 55.558 kb on + strand, within ECD_00054 at 55.710 kb on - strand, within ECD_00054 at 55.711 kb on + strand, within ECD_00054 at 55.724 kb on - strand, within ECD_00054 at 55.778 kb on + strand at 55.779 kb on - strand at 55.839 kb on + strand at 56.743 kb on - strand, within ECD_00056
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 54,561 + -1.1 54,562 - +0.4 54,562 - +0.7 54,605 + -0.3 54,606 - +0.2 54,632 - -0.3 54,700 - ECD_00053 0.15 -1.8 54,701 + ECD_00053 0.15 -1.4 54,701 + ECD_00053 0.15 -1.0 54,702 - ECD_00053 0.15 +1.0 54,835 + ECD_00053 0.31 -0.8 54,879 - ECD_00053 0.36 -1.3 54,952 + ECD_00053 0.45 -1.0 54,957 - ECD_00053 0.45 +0.8 54,957 - ECD_00053 0.45 -0.8 55,242 + ECD_00053 0.79 +0.6 55,243 - ECD_00053 0.79 +0.6 55,356 - -0.8 55,404 - -1.4 55,409 - -2.0 55,558 + ECD_00054 0.35 +1.1 55,558 + ECD_00054 0.35 +1.0 55,710 - ECD_00054 0.75 -1.4 55,711 + ECD_00054 0.76 -1.9 55,724 - ECD_00054 0.79 -0.2 55,778 + -0.5 55,779 - +0.1 55,839 + -1.1 56,743 - ECD_00056 0.12 +0.5
Or see this region's nucleotide sequence