Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00710

Experiment: McCas_formate_complete sulfate 125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete sulfate 125 mM
137,788	+		MMJJ_RS00705	0.25	-3.5
137,820	-		MMJJ_RS00705	0.29	+0.7
137,820	-		MMJJ_RS00705	0.29	+0.8
137,821	+		MMJJ_RS00705	0.29	+1.6
137,823	-		MMJJ_RS00705	0.29	-2.9
137,823	-		MMJJ_RS00705	0.29	+1.6
137,824	+		MMJJ_RS00705	0.29	+2.9
137,842	+		MMJJ_RS00705	0.32	+1.0
137,849	-		MMJJ_RS00705	0.32	+1.3
137,878	+		MMJJ_RS00705	0.36	+0.8
137,959	+		MMJJ_RS00705	0.46	-1.8
138,015	-		MMJJ_RS00705	0.53	+1.5
138,016	+		MMJJ_RS00705	0.53	-3.3
138,016	+		MMJJ_RS00705	0.53	+2.0
138,016	+		MMJJ_RS00705	0.53	-0.2
138,016	+		MMJJ_RS00705	0.53	-2.3
138,016	+		MMJJ_RS00705	0.53	+2.4
138,150	-		MMJJ_RS00705	0.69	+0.9
138,150	-		MMJJ_RS00705	0.69	-0.8
138,159	-		MMJJ_RS00705	0.70	+1.8
138,160	+		MMJJ_RS00705	0.70	-3.1
138,198	+		MMJJ_RS00705	0.75	+0.2
138,222	-		MMJJ_RS00705	0.78	+0.3
138,227	-		MMJJ_RS00705	0.78	-1.2
138,228	+		MMJJ_RS00705	0.78	+0.8
138,228	+		MMJJ_RS00705	0.78	+2.3
138,240	-		MMJJ_RS00705	0.80	+1.2
138,252	+		MMJJ_RS00705	0.81	-2.0
138,272	-		MMJJ_RS00705	0.84	-0.3
138,403	+				-2.6
138,420	-				-1.0
138,420	-				-0.3
138,420	-				-3.9
138,420	-				-2.0
138,421	+				-0.5
138,421	+				-3.6
138,421	+				-1.4
138,421	+				+3.4
138,421	+				-1.1
138,421	+				-2.4
138,422	-				-0.5
138,422	-				+1.3
138,422	-				+2.9
138,422	-				-1.1
138,422	-				+2.0
138,423	+				+2.0
138,423	+				+1.8
138,423	+				-4.8
138,423	+				-2.1
138,424	-				+1.3
138,424	-				-2.9
138,424	-				+2.1
138,424	-				+1.7
138,424	-				-1.8
138,424	-				+1.0
138,425	+				-2.7
138,425	+				+1.2
138,425	+				-2.0
138,425	+				-0.3
138,425	+				+1.0
138,425	+				+3.2
138,425	+				-1.9
138,425	+				+2.7
138,425	+				+2.0
138,466	+				-2.3
138,493	+				+2.0
138,499	-				-0.1
138,499	-				+2.1
138,499	-				-2.7
138,499	-				+0.2
138,500	+				+3.6
138,500	+				-2.7
138,500	+				-2.2
138,504	-				-0.4
138,508	-				-0.7
138,511	-				-0.2
138,514	+				-3.2
138,652	-				+0.3
138,653	+				-4.0
138,653	+				-2.7
138,657	-				-2.7
138,657	-				+0.7
138,667	-				+0.5
138,672	-				-0.6
138,672	-				-2.0
138,672	-				-2.1
138,672	-				-0.2
138,672	-				-0.8
138,673	+				+0.4
138,673	+				+1.7
138,675	-				+2.1
138,681	-				+2.8
138,684	-				-0.3
138,684	-				-2.5
138,685	+				+0.6
138,693	-				+1.6
138,695	-				+2.8
138,695	-				-2.1
138,715	-				+1.3
138,715	-				-0.2
138,715	-				-2.2
138,716	+				+2.0
138,716	+				+5.5
138,716	+				-0.4
138,719	+				+0.9
138,719	+				-1.6
138,724	+				-0.4
138,795	-				-2.3
138,795	-				-4.2
138,795	-				-3.9
138,801	-		MMJJ_RS00710	0.10	+2.2
138,814	-		MMJJ_RS00710	0.13	-2.1
138,814	-		MMJJ_RS00710	0.13	-3.5
138,814	-		MMJJ_RS00710	0.13	+0.7
138,814	-		MMJJ_RS00710	0.13	-0.3
138,814	-		MMJJ_RS00710	0.13	+0.1
138,815	+		MMJJ_RS00710	0.13	-1.7
138,815	+		MMJJ_RS00710	0.13	-0.7
138,851	-		MMJJ_RS00710	0.21	+2.0
138,867	-				+0.7
138,867	-		MMJJ_RS00710	0.24	+0.9
138,868	+		MMJJ_RS00710	0.24	+0.3
138,868	+		MMJJ_RS00710	0.24	-0.1
138,868	+		MMJJ_RS00710	0.24	-2.1
138,873	-		MMJJ_RS00710	0.25	-2.3
138,874	+		MMJJ_RS00710	0.25	+1.3
138,874	+		MMJJ_RS00710	0.25	+0.6
138,874	+		MMJJ_RS00710	0.25	-2.8
138,874	+		MMJJ_RS00710	0.25	-0.5
138,919	-		MMJJ_RS00710	0.35	+1.5
138,947	-		MMJJ_RS00710	0.41	+1.0
138,947	-		MMJJ_RS00710	0.41	-2.1
138,952	+		MMJJ_RS00710	0.42	+1.8
138,982	-		MMJJ_RS00710	0.48	-3.4
138,982	-		MMJJ_RS00710	0.48	-3.1
138,983	+		MMJJ_RS00710	0.48	+0.3
139,001	+		MMJJ_RS00710	0.52	-0.6
139,078	+		MMJJ_RS00710	0.68	-3.4
139,082	+		MMJJ_RS00710	0.69	-1.8
139,096	+		MMJJ_RS00710	0.72	+1.3
139,151	+		MMJJ_RS00710	0.83	+2.6
139,151	+		MMJJ_RS00710	0.83	-2.5
139,152	-		MMJJ_RS00710	0.83	-0.7
139,153	+		MMJJ_RS00710	0.84	+0.0
139,153	+		MMJJ_RS00710	0.84	-0.1
139,156	-		MMJJ_RS00710	0.84	-1.6
139,157	+		MMJJ_RS00710	0.84	-2.0
139,172	-		MMJJ_RS00710	0.88	-1.1
139,172	-		MMJJ_RS00710	0.88	+0.1
139,172	-		MMJJ_RS00710	0.88	+0.8
139,172	-		MMJJ_RS00710	0.88	-4.0
139,173	+		MMJJ_RS00710	0.88	+0.0
139,173	+		MMJJ_RS00710	0.88	+3.3
139,186	+				-0.1
139,201	-				-3.4
139,201	-				+3.3
139,202	+				-2.2
139,203	-				-0.9
139,203	-				+0.9
139,203	-				+1.2
139,203	-				+0.7
139,203	-				-0.3
139,204	+				+3.6
139,204	+				+1.3
139,204	+				+0.4
139,204	+				+1.5
139,262	-				-2.4
139,262	-				-1.3
139,262	-				+1.7
139,263	+				+0.9
139,263	+				-0.9
139,263	+				+1.4
139,265	-				-1.1
139,265	-				-4.0
139,371	+		MMJJ_RS00715	0.18	-2.5
139,374	-		MMJJ_RS00715	0.18	+1.7
139,375	+		MMJJ_RS00715	0.18	+0.5
139,402	-		MMJJ_RS00715	0.23	+1.1
139,435	-		MMJJ_RS00715	0.28	+2.6
139,436	+		MMJJ_RS00715	0.28	-0.1
139,459	-		MMJJ_RS00715	0.32	-3.3
139,460	+		MMJJ_RS00715	0.32	+1.3
139,460	+		MMJJ_RS00715	0.32	-0.4
139,460	+		MMJJ_RS00715	0.32	-2.6
139,484	-		MMJJ_RS00715	0.36	+0.7
139,485	+		MMJJ_RS00715	0.36	-0.2
139,549	+		MMJJ_RS00715	0.46	-0.4
139,589	+		MMJJ_RS00715	0.52	+0.3
139,600	-		MMJJ_RS00715	0.54	+2.3
139,690	+		MMJJ_RS00715	0.68	+4.2
139,717	+		MMJJ_RS00715	0.73	-3.3
139,720	-		MMJJ_RS00715	0.73	+4.0
139,723	-		MMJJ_RS00715	0.74	-1.0
139,723	-		MMJJ_RS00715	0.74	+1.6
139,726	+		MMJJ_RS00715	0.74	+0.5
139,755	-		MMJJ_RS00715	0.79	+0.4
139,756	+		MMJJ_RS00715	0.79	+2.4
139,762	+		MMJJ_RS00715	0.80	+0.8
139,767	+		MMJJ_RS00715	0.81	+2.5
139,789	+		MMJJ_RS00715	0.84	+1.7
139,789	+		MMJJ_RS00715	0.84	+2.1
139,841	+				-2.8
139,849	-				+2.9
139,854	+				-0.6
139,856	-				+3.3
139,859	+				+0.7
139,879	-				-0.7
139,919	+				+1.7
139,924	+				-3.5
139,936	+				+1.6
139,942	-				-1.3
139,946	-				-2.7
139,946	-				-0.8
139,946	-				+0.7
139,962	+				+2.7
139,963	-				+1.2
139,963	-				+1.3
139,964	+				-1.1
139,964	+				+1.6
140,001	-				+1.3
140,001	-				+1.9
140,002	+				-2.9
140,002	+				-1.5
140,002	+				+0.5
140,022	-				-0.1
140,056	+		MMJJ_RS00720	0.10	-2.1
140,118	-		MMJJ_RS00720	0.15	+2.0
140,118	-		MMJJ_RS00720	0.15	-0.9
140,119	+		MMJJ_RS00720	0.15	+0.3
140,120	-		MMJJ_RS00720	0.15	-2.9