Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05790

Experiment: McCas_formate_complete deta nonoate 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete deta nonoate 0.025 mM
1,077,320	-		MMJJ_RS05780	0.61	-0.6
1,077,539	-				-2.1
1,077,586	-				+1.2
1,077,739	-		MMJJ_RS05785	0.22	-2.6
1,077,739	-		MMJJ_RS05785	0.22	+1.3
1,077,739	-		MMJJ_RS05785	0.22	-2.7
1,077,739	-		MMJJ_RS05785	0.22	-0.5
1,077,739	-		MMJJ_RS05785	0.22	-1.9
1,077,740	+		MMJJ_RS05785	0.22	-2.6
1,077,756	-		MMJJ_RS05785	0.24	-3.6
1,077,775	+		MMJJ_RS05785	0.27	-0.4
1,077,819	-		MMJJ_RS05785	0.34	-0.5
1,077,822	-		MMJJ_RS05785	0.34	+3.2
1,077,829	-		MMJJ_RS05785	0.35	-4.2
1,077,844	-		MMJJ_RS05785	0.38	+0.1
1,077,852	-		MMJJ_RS05785	0.39	+0.2
1,077,852	-		MMJJ_RS05785	0.39	-1.6
1,077,852	-		MMJJ_RS05785	0.39	-0.5
1,077,852	-		MMJJ_RS05785	0.39	+0.5
1,077,852	-		MMJJ_RS05785	0.39	-2.8
1,077,853	+		MMJJ_RS05785	0.39	-1.3
1,077,853	+		MMJJ_RS05785	0.39	-1.5
1,077,860	-		MMJJ_RS05785	0.40	-2.6
1,077,860	-		MMJJ_RS05785	0.40	+0.1
1,077,860	-		MMJJ_RS05785	0.40	-0.5
1,077,861	+		MMJJ_RS05785	0.40	-0.9
1,077,880	-		MMJJ_RS05785	0.43	-0.8
1,077,891	+				+0.9
1,077,891	+		MMJJ_RS05785	0.45	-2.9
1,077,897	-		MMJJ_RS05785	0.46	-0.8
1,077,897	-		MMJJ_RS05785	0.46	-4.3
1,077,898	+		MMJJ_RS05785	0.46	-2.8
1,077,905	-		MMJJ_RS05785	0.47	+0.0
1,077,910	+		MMJJ_RS05785	0.48	-2.9
1,077,910	+		MMJJ_RS05785	0.48	+2.1
1,077,995	-		MMJJ_RS05785	0.61	-2.2
1,078,050	-		MMJJ_RS05785	0.69	+0.2
1,078,050	-		MMJJ_RS05785	0.69	-0.2
1,078,057	+		MMJJ_RS05785	0.71	-2.0
1,078,063	-		MMJJ_RS05785	0.71	-0.7
1,078,089	-		MMJJ_RS05785	0.75	-2.7
1,078,089	-		MMJJ_RS05785	0.75	+0.2
1,078,090	+		MMJJ_RS05785	0.76	-0.6
1,078,124	-		MMJJ_RS05785	0.81	+1.1
1,078,141	-		MMJJ_RS05785	0.83	+1.1
1,078,141	-		MMJJ_RS05785	0.83	-0.8
1,078,169	+		MMJJ_RS05785	0.88	-0.2
1,078,169	+		MMJJ_RS05785	0.88	-4.6
1,078,169	+		MMJJ_RS05785	0.88	-1.6
1,078,283	-				+1.1
1,078,283	-				+0.1
1,078,287	-				+0.7
1,078,288	+				-1.8
1,078,298	-				-2.7
1,078,299	+				-2.5
1,078,299	+				-0.4
1,078,314	-				+1.9
1,078,315	+				-0.8
1,078,315	+				-0.5
1,078,315	+				-2.4
1,078,330	-				+0.1
1,078,330	-				-0.1
1,078,340	+				+0.9
1,078,488	-		MMJJ_RS05790	0.32	+0.7
1,078,501	-		MMJJ_RS05790	0.34	+0.4
1,078,502	+		MMJJ_RS05790	0.34	+2.2
1,078,548	+		MMJJ_RS05790	0.41	-1.8
1,078,624	-		MMJJ_RS05790	0.53	-0.7
1,078,674	+		MMJJ_RS05790	0.61	-1.7
1,078,677	-		MMJJ_RS05790	0.61	+2.1
1,078,677	-		MMJJ_RS05790	0.61	+0.3
1,078,678	+		MMJJ_RS05790	0.62	+0.3
1,078,678	+		MMJJ_RS05790	0.62	+0.0
1,078,678	+		MMJJ_RS05790	0.62	-1.1
1,078,678	+		MMJJ_RS05790	0.62	-0.1
1,078,760	+		MMJJ_RS05790	0.75	-0.5
1,078,793	-		MMJJ_RS05790	0.80	-0.1
1,078,793	-				-0.6
1,078,793	-		MMJJ_RS05790	0.80	+0.4
1,078,794	+		MMJJ_RS05790	0.80	+0.0
1,078,810	-		MMJJ_RS05790	0.82	-0.3
1,078,814	-		MMJJ_RS05790	0.83	-0.8
1,078,842	+		MMJJ_RS05790	0.87	-0.5
1,078,842	+		MMJJ_RS05790	0.87	+0.2
1,078,842	+		MMJJ_RS05790	0.87	-0.5
1,078,842	+		MMJJ_RS05790	0.87	-2.1
1,078,845	+		MMJJ_RS05790	0.88	-1.1
1,078,845	+		MMJJ_RS05790	0.88	-1.4
1,078,845	+		MMJJ_RS05790	0.88	+0.4
1,078,870	-				-0.3
1,078,871	+				-1.2
1,078,871	+				-0.2
1,078,914	+				-1.1
1,078,935	+				+0.6
1,078,935	+				+0.3
1,078,967	+				+1.0
1,078,967	+				-0.2
1,079,048	-				-1.6
1,079,048	-				-0.7
1,079,049	+				-0.6
1,079,049	+				-0.7
1,079,049	+				+1.1
1,079,051	+				-1.4
1,079,051	+				-0.5
1,079,068	+				-0.4
1,079,078	+				+0.7
1,079,087	-				-0.5
1,079,104	+				+0.5
1,079,119	-				-0.4
1,079,123	-				-0.3
1,079,134	+				-1.6
1,079,134	+				-0.5
1,079,153	-				+0.3
1,079,181	+				-0.3
1,079,181	+				+1.3
1,079,181	+				+0.0
1,079,181	+				-1.5
1,079,190	+				+0.5
1,079,190	+				+0.8
1,079,199	-				-3.8
1,079,203	+				+0.8
1,079,203	+				-1.0
1,079,208	-				-2.7
1,079,209	+				-0.7
1,079,231	-				+0.1
1,079,231	-				-0.9
1,079,241	-				-0.3
1,079,283	-				-2.6
1,079,368	+				-0.1
1,079,487	+		MMJJ_RS05795	0.15	+0.1
1,079,507	-		MMJJ_RS05795	0.17	-2.5
1,079,508	+		MMJJ_RS05795	0.17	-0.5
1,079,573	-		MMJJ_RS05795	0.21	+0.2
1,079,573	-		MMJJ_RS05795	0.21	-0.5
1,079,573	-		MMJJ_RS05795	0.21	+0.1
1,079,573	-		MMJJ_RS05795	0.21	-0.1
1,079,573	-		MMJJ_RS05795	0.21	+0.9
1,079,574	+		MMJJ_RS05795	0.21	-1.9
1,079,574	+		MMJJ_RS05795	0.21	-0.6
1,079,574	+		MMJJ_RS05795	0.21	+0.2
1,079,574	+		MMJJ_RS05795	0.21	-0.5
1,079,574	+		MMJJ_RS05795	0.21	-2.6
1,079,574	+		MMJJ_RS05795	0.21	+0.3
1,079,574	+		MMJJ_RS05795	0.21	+0.8
1,079,574	+		MMJJ_RS05795	0.21	+1.5
1,079,574	+		MMJJ_RS05795	0.21	+0.5
1,079,574	+		MMJJ_RS05795	0.21	+0.3
1,079,578	-		MMJJ_RS05795	0.21	+0.6
1,079,578	-		MMJJ_RS05795	0.21	-1.1
1,079,578	-		MMJJ_RS05795	0.21	-0.0
1,079,578	-		MMJJ_RS05795	0.21	-0.1
1,079,579	+		MMJJ_RS05795	0.21	-2.0
1,079,579	+		MMJJ_RS05795	0.21	-1.5
1,079,579	+		MMJJ_RS05795	0.21	-0.7
1,079,579	+		MMJJ_RS05795	0.21	-0.7
1,079,580	-		MMJJ_RS05795	0.21	+0.8
1,079,580	-		MMJJ_RS05795	0.21	-0.6
1,079,580	-		MMJJ_RS05795	0.21	+0.7
1,079,581	+		MMJJ_RS05795	0.21	-0.2
1,079,584	+		MMJJ_RS05795	0.21	-0.5
1,079,584	+		MMJJ_RS05795	0.21	+1.9
1,079,584	+		MMJJ_RS05795	0.21	-0.3
1,079,584	+		MMJJ_RS05795	0.21	-1.4
1,079,596	-		MMJJ_RS05795	0.22	-0.3
1,079,596	-		MMJJ_RS05795	0.22	-0.6
1,079,597	+		MMJJ_RS05795	0.22	-0.9
1,079,623	+		MMJJ_RS05795	0.24	+1.2
1,079,660	+		MMJJ_RS05795	0.26	-0.2
1,079,660	+		MMJJ_RS05795	0.26	-2.0
1,079,660	+		MMJJ_RS05795	0.26	-0.2
1,079,660	+		MMJJ_RS05795	0.26	-2.5
1,079,676	+		MMJJ_RS05795	0.27	+0.5
1,079,819	-		MMJJ_RS05795	0.35	-0.2
1,079,820	+		MMJJ_RS05795	0.35	-0.8
1,079,820	+		MMJJ_RS05795	0.35	+0.8
1,079,852	-		MMJJ_RS05795	0.37	-1.1
1,079,868	-		MMJJ_RS05795	0.38	+0.0
1,079,886	-		MMJJ_RS05795	0.39	+2.2
1,079,917	+		MMJJ_RS05795	0.41	-2.5