Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04613 and MPMX20_04614 overlap by 35 nucleotides MPMX20_04614 and MPMX20_04615 are separated by 12 nucleotides MPMX20_04615 and MPMX20_04616 are separated by 107 nucleotides
MPMX20_04613: MPMX20_04613 - putative transport protein HsrA, at 4,830,654 to 4,832,087
_04613
MPMX20_04614: MPMX20_04614 - Ribose operon repressor, at 4,832,053 to 4,833,036
_04614
MPMX20_04615: MPMX20_04615 - Ribokinase, at 4,833,049 to 4,833,978
_04615
MPMX20_04616: MPMX20_04616 - Ribose import binding protein RbsB, at 4,834,086 to 4,834,976
_04616
Position (kb)
4833
4834 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4832.051 kb on + strand at 4832.051 kb on + strand at 4832.057 kb on + strand at 4832.059 kb on - strand at 4832.074 kb on - strand at 4832.084 kb on - strand at 4832.096 kb on - strand at 4832.103 kb on + strand at 4832.180 kb on + strand, within MPMX20_04614 at 4832.322 kb on - strand, within MPMX20_04614 at 4832.352 kb on + strand, within MPMX20_04614 at 4832.404 kb on - strand, within MPMX20_04614 at 4832.512 kb on + strand, within MPMX20_04614 at 4832.520 kb on - strand, within MPMX20_04614 at 4832.540 kb on - strand, within MPMX20_04614 at 4832.611 kb on - strand, within MPMX20_04614 at 4832.641 kb on - strand, within MPMX20_04614 at 4832.641 kb on - strand, within MPMX20_04614 at 4832.685 kb on + strand, within MPMX20_04614 at 4832.685 kb on + strand, within MPMX20_04614 at 4832.685 kb on + strand, within MPMX20_04614 at 4832.693 kb on - strand, within MPMX20_04614 at 4832.756 kb on + strand, within MPMX20_04614 at 4832.756 kb on + strand, within MPMX20_04614 at 4832.764 kb on - strand, within MPMX20_04614 at 4832.764 kb on - strand, within MPMX20_04614 at 4832.766 kb on + strand, within MPMX20_04614 at 4832.766 kb on + strand, within MPMX20_04614 at 4832.766 kb on + strand, within MPMX20_04614 at 4832.769 kb on - strand, within MPMX20_04614 at 4832.774 kb on - strand, within MPMX20_04614 at 4832.774 kb on - strand, within MPMX20_04614 at 4832.774 kb on - strand, within MPMX20_04614 at 4832.774 kb on - strand, within MPMX20_04614 at 4832.774 kb on - strand, within MPMX20_04614 at 4832.781 kb on - strand, within MPMX20_04614 at 4832.789 kb on + strand, within MPMX20_04614 at 4832.797 kb on + strand, within MPMX20_04614 at 4832.805 kb on - strand, within MPMX20_04614 at 4832.805 kb on - strand, within MPMX20_04614 at 4832.836 kb on + strand, within MPMX20_04614 at 4832.858 kb on + strand, within MPMX20_04614 at 4832.866 kb on - strand, within MPMX20_04614 at 4832.880 kb on + strand, within MPMX20_04614 at 4832.882 kb on - strand, within MPMX20_04614 at 4832.888 kb on - strand, within MPMX20_04614 at 4832.922 kb on - strand, within MPMX20_04614 at 4832.928 kb on - strand, within MPMX20_04614 at 4833.040 kb on + strand at 4833.040 kb on + strand at 4833.046 kb on + strand at 4833.046 kb on + strand at 4833.046 kb on + strand at 4833.046 kb on + strand at 4833.054 kb on - strand at 4833.054 kb on - strand at 4833.103 kb on - strand at 4833.110 kb on + strand at 4833.118 kb on - strand at 4833.118 kb on - strand at 4833.139 kb on + strand at 4833.176 kb on + strand, within MPMX20_04615 at 4833.184 kb on - strand, within MPMX20_04615 at 4833.184 kb on - strand, within MPMX20_04615 at 4833.184 kb on - strand, within MPMX20_04615 at 4833.184 kb on - strand, within MPMX20_04615 at 4833.193 kb on + strand, within MPMX20_04615 at 4833.195 kb on + strand, within MPMX20_04615 at 4833.203 kb on - strand, within MPMX20_04615 at 4833.246 kb on + strand, within MPMX20_04615 at 4833.247 kb on - strand, within MPMX20_04615 at 4833.254 kb on - strand, within MPMX20_04615 at 4833.294 kb on - strand, within MPMX20_04615 at 4833.296 kb on - strand, within MPMX20_04615 at 4833.317 kb on - strand, within MPMX20_04615 at 4833.333 kb on - strand, within MPMX20_04615 at 4833.431 kb on - strand, within MPMX20_04615 at 4833.431 kb on - strand, within MPMX20_04615 at 4833.431 kb on - strand, within MPMX20_04615 at 4833.479 kb on + strand, within MPMX20_04615 at 4833.487 kb on - strand, within MPMX20_04615 at 4833.567 kb on - strand, within MPMX20_04615 at 4833.616 kb on + strand, within MPMX20_04615 at 4833.616 kb on + strand, within MPMX20_04615 at 4833.626 kb on + strand, within MPMX20_04615 at 4833.626 kb on + strand, within MPMX20_04615 at 4833.626 kb on + strand, within MPMX20_04615 at 4833.626 kb on + strand, within MPMX20_04615 at 4833.626 kb on + strand, within MPMX20_04615 at 4833.626 kb on + strand, within MPMX20_04615 at 4833.626 kb on + strand, within MPMX20_04615 at 4833.634 kb on - strand, within MPMX20_04615 at 4833.634 kb on - strand, within MPMX20_04615 at 4833.634 kb on - strand, within MPMX20_04615 at 4833.634 kb on - strand, within MPMX20_04615 at 4833.647 kb on - strand, within MPMX20_04615 at 4833.699 kb on + strand, within MPMX20_04615 at 4833.736 kb on - strand, within MPMX20_04615 at 4833.736 kb on - strand, within MPMX20_04615 at 4833.771 kb on - strand, within MPMX20_04615 at 4833.778 kb on + strand, within MPMX20_04615 at 4833.779 kb on + strand, within MPMX20_04615 at 4833.786 kb on - strand, within MPMX20_04615 at 4833.876 kb on + strand, within MPMX20_04615 at 4833.902 kb on + strand at 4833.980 kb on + strand at 4834.003 kb on + strand at 4834.003 kb on + strand at 4834.011 kb on - strand at 4834.054 kb on - strand at 4834.062 kb on + strand at 4834.062 kb on + strand at 4834.062 kb on + strand at 4834.070 kb on - strand at 4834.143 kb on + strand at 4834.196 kb on + strand, within MPMX20_04616 at 4834.369 kb on + strand, within MPMX20_04616 at 4834.504 kb on + strand, within MPMX20_04616 at 4834.565 kb on - strand, within MPMX20_04616 at 4834.641 kb on + strand, within MPMX20_04616 at 4834.749 kb on - strand, within MPMX20_04616 at 4834.754 kb on - strand, within MPMX20_04616 at 4834.754 kb on - strand, within MPMX20_04616 at 4834.761 kb on - strand, within MPMX20_04616 at 4834.861 kb on + strand, within MPMX20_04616 at 4834.876 kb on + strand, within MPMX20_04616 at 4834.925 kb on - strand at 4834.930 kb on - strand at 4834.942 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,832,051 + +2.3 4,832,051 + +1.5 4,832,057 + -1.2 4,832,059 - +0.1 4,832,074 - -1.8 4,832,084 - -1.2 4,832,096 - -2.1 4,832,103 + -0.4 4,832,180 + MPMX20_04614 0.13 -2.5 4,832,322 - MPMX20_04614 0.27 -1.7 4,832,352 + MPMX20_04614 0.30 -2.5 4,832,404 - MPMX20_04614 0.36 -1.4 4,832,512 + MPMX20_04614 0.47 +0.3 4,832,520 - MPMX20_04614 0.47 -2.6 4,832,540 - MPMX20_04614 0.49 -1.4 4,832,611 - MPMX20_04614 0.57 -2.6 4,832,641 - MPMX20_04614 0.60 -2.2 4,832,641 - MPMX20_04614 0.60 +0.9 4,832,685 + MPMX20_04614 0.64 -2.1 4,832,685 + MPMX20_04614 0.64 -2.0 4,832,685 + MPMX20_04614 0.64 -2.1 4,832,693 - MPMX20_04614 0.65 -3.4 4,832,756 + MPMX20_04614 0.71 -2.1 4,832,756 + MPMX20_04614 0.71 -0.1 4,832,764 - MPMX20_04614 0.72 -2.0 4,832,764 - MPMX20_04614 0.72 -2.3 4,832,766 + MPMX20_04614 0.72 -2.7 4,832,766 + MPMX20_04614 0.72 -1.2 4,832,766 + MPMX20_04614 0.72 -4.4 4,832,769 - MPMX20_04614 0.73 -2.0 4,832,774 - MPMX20_04614 0.73 -1.2 4,832,774 - MPMX20_04614 0.73 -0.2 4,832,774 - MPMX20_04614 0.73 -2.9 4,832,774 - MPMX20_04614 0.73 -2.6 4,832,774 - MPMX20_04614 0.73 -1.6 4,832,781 - MPMX20_04614 0.74 -1.6 4,832,789 + MPMX20_04614 0.75 -1.2 4,832,797 + MPMX20_04614 0.76 -0.5 4,832,805 - MPMX20_04614 0.76 -1.8 4,832,805 - MPMX20_04614 0.76 -1.7 4,832,836 + MPMX20_04614 0.80 -1.0 4,832,858 + MPMX20_04614 0.82 -2.1 4,832,866 - MPMX20_04614 0.83 -0.1 4,832,880 + MPMX20_04614 0.84 -0.3 4,832,882 - MPMX20_04614 0.84 -0.5 4,832,888 - MPMX20_04614 0.85 -1.5 4,832,922 - MPMX20_04614 0.88 -0.9 4,832,928 - MPMX20_04614 0.89 -3.4 4,833,040 + -1.5 4,833,040 + -1.4 4,833,046 + -2.2 4,833,046 + -1.6 4,833,046 + -1.5 4,833,046 + -1.7 4,833,054 - -0.3 4,833,054 - -0.5 4,833,103 - -2.2 4,833,110 + -3.2 4,833,118 - -1.1 4,833,118 - -1.2 4,833,139 + -1.4 4,833,176 + MPMX20_04615 0.14 -1.6 4,833,184 - MPMX20_04615 0.15 -0.9 4,833,184 - MPMX20_04615 0.15 +0.6 4,833,184 - MPMX20_04615 0.15 -0.2 4,833,184 - MPMX20_04615 0.15 -0.7 4,833,193 + MPMX20_04615 0.15 -3.1 4,833,195 + MPMX20_04615 0.16 -0.3 4,833,203 - MPMX20_04615 0.17 +0.5 4,833,246 + MPMX20_04615 0.21 -2.2 4,833,247 - MPMX20_04615 0.21 -2.6 4,833,254 - MPMX20_04615 0.22 -1.9 4,833,294 - MPMX20_04615 0.26 -1.1 4,833,296 - MPMX20_04615 0.27 -2.6 4,833,317 - MPMX20_04615 0.29 -1.1 4,833,333 - MPMX20_04615 0.31 -2.5 4,833,431 - MPMX20_04615 0.41 -2.4 4,833,431 - MPMX20_04615 0.41 -1.3 4,833,431 - MPMX20_04615 0.41 -0.7 4,833,479 + MPMX20_04615 0.46 -2.9 4,833,487 - MPMX20_04615 0.47 -2.4 4,833,567 - MPMX20_04615 0.56 -0.7 4,833,616 + MPMX20_04615 0.61 -2.9 4,833,616 + MPMX20_04615 0.61 -1.2 4,833,626 + MPMX20_04615 0.62 -1.3 4,833,626 + MPMX20_04615 0.62 -1.9 4,833,626 + MPMX20_04615 0.62 -1.2 4,833,626 + MPMX20_04615 0.62 +2.3 4,833,626 + MPMX20_04615 0.62 -3.5 4,833,626 + MPMX20_04615 0.62 -2.6 4,833,626 + MPMX20_04615 0.62 +0.5 4,833,634 - MPMX20_04615 0.63 -1.8 4,833,634 - MPMX20_04615 0.63 -0.3 4,833,634 - MPMX20_04615 0.63 -1.2 4,833,634 - MPMX20_04615 0.63 -2.7 4,833,647 - MPMX20_04615 0.64 -1.5 4,833,699 + MPMX20_04615 0.70 -0.1 4,833,736 - MPMX20_04615 0.74 -0.9 4,833,736 - MPMX20_04615 0.74 -1.4 4,833,771 - MPMX20_04615 0.78 -2.1 4,833,778 + MPMX20_04615 0.78 -0.1 4,833,779 + MPMX20_04615 0.78 -1.7 4,833,786 - MPMX20_04615 0.79 -2.8 4,833,876 + MPMX20_04615 0.89 -3.5 4,833,902 + -0.2 4,833,980 + -1.9 4,834,003 + -1.7 4,834,003 + +3.5 4,834,011 - -1.7 4,834,054 - +4.3 4,834,062 + +0.5 4,834,062 + -1.5 4,834,062 + -1.7 4,834,070 - -0.1 4,834,143 + -1.1 4,834,196 + MPMX20_04616 0.12 -1.6 4,834,369 + MPMX20_04616 0.32 -0.5 4,834,504 + MPMX20_04616 0.47 +1.3 4,834,565 - MPMX20_04616 0.54 +1.0 4,834,641 + MPMX20_04616 0.62 -0.6 4,834,749 - MPMX20_04616 0.74 -2.8 4,834,754 - MPMX20_04616 0.75 -1.5 4,834,754 - MPMX20_04616 0.75 -1.0 4,834,761 - MPMX20_04616 0.76 -1.0 4,834,861 + MPMX20_04616 0.87 -1.2 4,834,876 + MPMX20_04616 0.89 -0.4 4,834,925 - -0.7 4,834,930 - +0.6 4,834,942 + -0.6
Or see this region's nucleotide sequence