Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04152 and MPMX20_04153 are separated by 42 nucleotides MPMX20_04153 and MPMX20_04154 overlap by 11 nucleotides MPMX20_04154 and MPMX20_04155 are separated by 9 nucleotides
MPMX20_04152: MPMX20_04152 - hypothetical protein, at 4,351,851 to 4,355,651
_04152
MPMX20_04153: MPMX20_04153 - Ribonuclease G, at 4,355,694 to 4,357,163
_04153
MPMX20_04154: MPMX20_04154 - dTTP/UTP pyrophosphatase, at 4,357,153 to 4,357,746
_04154
MPMX20_04155: MPMX20_04155 - Rod shape-determining protein MreD, at 4,357,756 to 4,358,244
_04155
Position (kb)
4355
4356
4357
4358 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4354.698 kb on - strand, within MPMX20_04152 at 4354.701 kb on + strand, within MPMX20_04152 at 4354.791 kb on - strand, within MPMX20_04152 at 4354.859 kb on + strand, within MPMX20_04152 at 4354.867 kb on - strand, within MPMX20_04152 at 4354.867 kb on - strand, within MPMX20_04152 at 4354.896 kb on + strand, within MPMX20_04152 at 4354.911 kb on + strand, within MPMX20_04152 at 4354.927 kb on - strand, within MPMX20_04152 at 4354.958 kb on + strand, within MPMX20_04152 at 4355.045 kb on + strand, within MPMX20_04152 at 4355.053 kb on - strand, within MPMX20_04152 at 4355.068 kb on - strand, within MPMX20_04152 at 4355.093 kb on + strand, within MPMX20_04152 at 4355.094 kb on - strand, within MPMX20_04152 at 4355.112 kb on - strand, within MPMX20_04152 at 4355.144 kb on + strand, within MPMX20_04152 at 4355.167 kb on - strand, within MPMX20_04152 at 4355.171 kb on + strand, within MPMX20_04152 at 4355.171 kb on + strand, within MPMX20_04152 at 4355.178 kb on + strand, within MPMX20_04152 at 4355.179 kb on - strand, within MPMX20_04152 at 4355.179 kb on - strand, within MPMX20_04152 at 4355.180 kb on + strand, within MPMX20_04152 at 4355.195 kb on + strand, within MPMX20_04152 at 4355.200 kb on + strand, within MPMX20_04152 at 4355.281 kb on + strand at 4355.291 kb on + strand at 4355.368 kb on - strand at 4355.452 kb on - strand at 4355.558 kb on - strand at 4355.589 kb on - strand at 4355.700 kb on - strand at 4355.707 kb on + strand at 4355.725 kb on + strand at 4355.730 kb on - strand at 4355.788 kb on + strand at 4355.812 kb on + strand at 4355.953 kb on + strand, within MPMX20_04153 at 4356.001 kb on + strand, within MPMX20_04153 at 4356.073 kb on + strand, within MPMX20_04153 at 4356.086 kb on + strand, within MPMX20_04153 at 4356.101 kb on + strand, within MPMX20_04153 at 4356.169 kb on - strand, within MPMX20_04153 at 4356.169 kb on - strand, within MPMX20_04153 at 4356.193 kb on - strand, within MPMX20_04153 at 4356.204 kb on - strand, within MPMX20_04153 at 4356.212 kb on + strand, within MPMX20_04153 at 4356.364 kb on + strand, within MPMX20_04153 at 4356.425 kb on - strand, within MPMX20_04153 at 4356.448 kb on - strand, within MPMX20_04153 at 4356.523 kb on - strand, within MPMX20_04153 at 4356.540 kb on - strand, within MPMX20_04153 at 4356.572 kb on + strand, within MPMX20_04153 at 4356.592 kb on + strand, within MPMX20_04153 at 4356.592 kb on + strand, within MPMX20_04153 at 4356.600 kb on - strand, within MPMX20_04153 at 4356.600 kb on - strand, within MPMX20_04153 at 4356.732 kb on - strand, within MPMX20_04153 at 4356.970 kb on + strand, within MPMX20_04153 at 4356.978 kb on - strand, within MPMX20_04153 at 4356.978 kb on - strand, within MPMX20_04153 at 4356.978 kb on - strand, within MPMX20_04153 at 4356.980 kb on + strand, within MPMX20_04153 at 4357.011 kb on + strand, within MPMX20_04153 at 4357.103 kb on + strand at 4357.133 kb on + strand at 4357.146 kb on - strand at 4357.222 kb on - strand, within MPMX20_04154 at 4357.260 kb on - strand, within MPMX20_04154 at 4357.315 kb on - strand, within MPMX20_04154 at 4357.386 kb on + strand, within MPMX20_04154 at 4357.404 kb on - strand, within MPMX20_04154 at 4357.493 kb on - strand, within MPMX20_04154 at 4357.623 kb on - strand, within MPMX20_04154 at 4357.665 kb on - strand, within MPMX20_04154 at 4357.671 kb on + strand, within MPMX20_04154 at 4357.671 kb on + strand, within MPMX20_04154
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,354,698 - MPMX20_04152 0.75 -1.4 4,354,701 + MPMX20_04152 0.75 +1.5 4,354,791 - MPMX20_04152 0.77 +0.5 4,354,859 + MPMX20_04152 0.79 +0.4 4,354,867 - MPMX20_04152 0.79 -0.1 4,354,867 - MPMX20_04152 0.79 -1.3 4,354,896 + MPMX20_04152 0.80 -1.7 4,354,911 + MPMX20_04152 0.81 -1.9 4,354,927 - MPMX20_04152 0.81 -0.8 4,354,958 + MPMX20_04152 0.82 +1.1 4,355,045 + MPMX20_04152 0.84 -2.7 4,355,053 - MPMX20_04152 0.84 -1.5 4,355,068 - MPMX20_04152 0.85 +1.5 4,355,093 + MPMX20_04152 0.85 -2.7 4,355,094 - MPMX20_04152 0.85 -1.2 4,355,112 - MPMX20_04152 0.86 -2.3 4,355,144 + MPMX20_04152 0.87 -1.3 4,355,167 - MPMX20_04152 0.87 -1.1 4,355,171 + MPMX20_04152 0.87 -1.5 4,355,171 + MPMX20_04152 0.87 +1.5 4,355,178 + MPMX20_04152 0.88 +0.5 4,355,179 - MPMX20_04152 0.88 -1.2 4,355,179 - MPMX20_04152 0.88 -0.9 4,355,180 + MPMX20_04152 0.88 +0.5 4,355,195 + MPMX20_04152 0.88 -1.3 4,355,200 + MPMX20_04152 0.88 -0.5 4,355,281 + -0.8 4,355,291 + -0.5 4,355,368 - -0.1 4,355,452 - -0.5 4,355,558 - -0.6 4,355,589 - -0.5 4,355,700 - +0.3 4,355,707 + +0.5 4,355,725 + +1.5 4,355,730 - +1.5 4,355,788 + -2.0 4,355,812 + -1.2 4,355,953 + MPMX20_04153 0.18 -0.2 4,356,001 + MPMX20_04153 0.21 -1.6 4,356,073 + MPMX20_04153 0.26 -2.2 4,356,086 + MPMX20_04153 0.27 -1.8 4,356,101 + MPMX20_04153 0.28 -3.8 4,356,169 - MPMX20_04153 0.32 -0.5 4,356,169 - MPMX20_04153 0.32 +1.1 4,356,193 - MPMX20_04153 0.34 -1.5 4,356,204 - MPMX20_04153 0.35 +0.5 4,356,212 + MPMX20_04153 0.35 -0.7 4,356,364 + MPMX20_04153 0.46 -2.7 4,356,425 - MPMX20_04153 0.50 -0.1 4,356,448 - MPMX20_04153 0.51 -0.4 4,356,523 - MPMX20_04153 0.56 -1.3 4,356,540 - MPMX20_04153 0.58 -0.5 4,356,572 + MPMX20_04153 0.60 +1.3 4,356,592 + MPMX20_04153 0.61 +1.5 4,356,592 + MPMX20_04153 0.61 +2.3 4,356,600 - MPMX20_04153 0.62 -0.5 4,356,600 - MPMX20_04153 0.62 +1.1 4,356,732 - MPMX20_04153 0.71 -1.8 4,356,970 + MPMX20_04153 0.87 -0.6 4,356,978 - MPMX20_04153 0.87 -0.5 4,356,978 - MPMX20_04153 0.87 -2.1 4,356,978 - MPMX20_04153 0.87 -1.9 4,356,980 + MPMX20_04153 0.87 -0.8 4,357,011 + MPMX20_04153 0.90 -0.8 4,357,103 + +0.8 4,357,133 + +0.3 4,357,146 - -1.1 4,357,222 - MPMX20_04154 0.12 -0.2 4,357,260 - MPMX20_04154 0.18 -0.5 4,357,315 - MPMX20_04154 0.27 -0.1 4,357,386 + MPMX20_04154 0.39 +0.4 4,357,404 - MPMX20_04154 0.42 +0.9 4,357,493 - MPMX20_04154 0.57 -0.3 4,357,623 - MPMX20_04154 0.79 -0.3 4,357,665 - MPMX20_04154 0.86 -1.1 4,357,671 + MPMX20_04154 0.87 +0.3 4,357,671 + MPMX20_04154 0.87 -1.2
Or see this region's nucleotide sequence