Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03046 and MPMX20_03047 are separated by 22 nucleotides MPMX20_03047 and MPMX20_03048 are separated by 91 nucleotides
MPMX20_03046: MPMX20_03046 - hypothetical protein, at 3,185,430 to 3,187,280
_03046
MPMX20_03047: MPMX20_03047 - dCTP deaminase, at 3,187,303 to 3,187,884
_03047
MPMX20_03048: MPMX20_03048 - Uridine kinase, at 3,187,976 to 3,188,617
_03048
Position (kb)
3187
3188 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3186.336 kb on + strand, within MPMX20_03046 at 3186.345 kb on + strand, within MPMX20_03046 at 3186.353 kb on - strand, within MPMX20_03046 at 3186.355 kb on + strand, within MPMX20_03046 at 3186.355 kb on + strand, within MPMX20_03046 at 3186.355 kb on + strand, within MPMX20_03046 at 3186.363 kb on - strand, within MPMX20_03046 at 3186.457 kb on - strand, within MPMX20_03046 at 3186.473 kb on - strand, within MPMX20_03046 at 3186.473 kb on - strand, within MPMX20_03046 at 3186.491 kb on - strand, within MPMX20_03046 at 3186.500 kb on + strand, within MPMX20_03046 at 3186.513 kb on - strand, within MPMX20_03046 at 3186.513 kb on - strand, within MPMX20_03046 at 3186.556 kb on - strand, within MPMX20_03046 at 3186.576 kb on - strand, within MPMX20_03046 at 3186.607 kb on - strand, within MPMX20_03046 at 3186.638 kb on + strand, within MPMX20_03046 at 3186.655 kb on - strand, within MPMX20_03046 at 3186.702 kb on + strand, within MPMX20_03046 at 3186.703 kb on - strand, within MPMX20_03046 at 3186.728 kb on - strand, within MPMX20_03046 at 3186.835 kb on - strand, within MPMX20_03046 at 3186.925 kb on + strand, within MPMX20_03046 at 3186.933 kb on - strand, within MPMX20_03046 at 3186.977 kb on - strand, within MPMX20_03046 at 3186.979 kb on + strand, within MPMX20_03046 at 3186.987 kb on - strand, within MPMX20_03046 at 3186.987 kb on - strand, within MPMX20_03046 at 3186.989 kb on + strand, within MPMX20_03046 at 3187.044 kb on - strand, within MPMX20_03046 at 3187.044 kb on - strand, within MPMX20_03046 at 3187.044 kb on - strand, within MPMX20_03046 at 3187.049 kb on + strand, within MPMX20_03046 at 3187.049 kb on + strand, within MPMX20_03046 at 3187.049 kb on + strand, within MPMX20_03046 at 3187.201 kb on - strand at 3187.215 kb on - strand at 3187.336 kb on - strand at 3187.393 kb on + strand, within MPMX20_03047 at 3187.401 kb on + strand, within MPMX20_03047 at 3187.409 kb on - strand, within MPMX20_03047 at 3187.409 kb on - strand, within MPMX20_03047 at 3187.413 kb on - strand, within MPMX20_03047 at 3187.460 kb on - strand, within MPMX20_03047 at 3187.485 kb on + strand, within MPMX20_03047 at 3187.493 kb on - strand, within MPMX20_03047 at 3187.495 kb on + strand, within MPMX20_03047 at 3187.495 kb on + strand, within MPMX20_03047 at 3187.503 kb on - strand, within MPMX20_03047 at 3187.573 kb on + strand, within MPMX20_03047 at 3187.638 kb on + strand, within MPMX20_03047 at 3187.782 kb on + strand, within MPMX20_03047 at 3187.790 kb on - strand, within MPMX20_03047 at 3187.796 kb on + strand, within MPMX20_03047 at 3187.796 kb on + strand, within MPMX20_03047 at 3187.814 kb on + strand, within MPMX20_03047 at 3187.815 kb on - strand, within MPMX20_03047 at 3187.815 kb on - strand, within MPMX20_03047 at 3187.834 kb on - strand at 3187.834 kb on - strand at 3187.855 kb on + strand at 3187.863 kb on - strand at 3187.912 kb on + strand at 3187.913 kb on - strand at 3187.913 kb on - strand at 3187.918 kb on + strand at 3187.942 kb on + strand at 3187.947 kb on + strand at 3187.948 kb on + strand at 3187.955 kb on + strand at 3187.956 kb on - strand at 3188.027 kb on + strand at 3188.059 kb on - strand, within MPMX20_03048 at 3188.066 kb on - strand, within MPMX20_03048 at 3188.114 kb on - strand, within MPMX20_03048 at 3188.160 kb on - strand, within MPMX20_03048 at 3188.189 kb on + strand, within MPMX20_03048 at 3188.227 kb on - strand, within MPMX20_03048 at 3188.236 kb on + strand, within MPMX20_03048 at 3188.236 kb on + strand, within MPMX20_03048 at 3188.236 kb on + strand, within MPMX20_03048 at 3188.236 kb on + strand, within MPMX20_03048 at 3188.244 kb on - strand, within MPMX20_03048 at 3188.244 kb on - strand, within MPMX20_03048 at 3188.315 kb on + strand, within MPMX20_03048 at 3188.323 kb on - strand, within MPMX20_03048 at 3188.323 kb on - strand, within MPMX20_03048 at 3188.323 kb on - strand, within MPMX20_03048 at 3188.323 kb on - strand, within MPMX20_03048 at 3188.328 kb on - strand, within MPMX20_03048 at 3188.393 kb on + strand, within MPMX20_03048 at 3188.393 kb on + strand, within MPMX20_03048 at 3188.393 kb on + strand, within MPMX20_03048 at 3188.393 kb on + strand, within MPMX20_03048 at 3188.393 kb on + strand, within MPMX20_03048 at 3188.393 kb on + strand, within MPMX20_03048 at 3188.401 kb on - strand, within MPMX20_03048 at 3188.416 kb on + strand, within MPMX20_03048 at 3188.456 kb on + strand, within MPMX20_03048 at 3188.464 kb on - strand, within MPMX20_03048 at 3188.464 kb on - strand, within MPMX20_03048 at 3188.464 kb on - strand, within MPMX20_03048 at 3188.479 kb on + strand, within MPMX20_03048 at 3188.501 kb on - strand, within MPMX20_03048 at 3188.513 kb on - strand, within MPMX20_03048 at 3188.522 kb on - strand, within MPMX20_03048 at 3188.524 kb on + strand, within MPMX20_03048 at 3188.524 kb on + strand, within MPMX20_03048 at 3188.524 kb on - strand, within MPMX20_03048 at 3188.545 kb on + strand, within MPMX20_03048 at 3188.599 kb on + strand at 3188.607 kb on - strand at 3188.662 kb on - strand at 3188.662 kb on - strand at 3188.662 kb on - strand at 3188.662 kb on - strand at 3188.667 kb on - strand at 3188.701 kb on + strand at 3188.701 kb on + strand at 3188.701 kb on + strand at 3188.701 kb on + strand at 3188.701 kb on + strand at 3188.727 kb on + strand at 3188.727 kb on + strand at 3188.727 kb on + strand at 3188.727 kb on + strand at 3188.727 kb on + strand at 3188.731 kb on - strand at 3188.735 kb on - strand at 3188.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,186,336 + MPMX20_03046 0.49 -1.9 3,186,345 + MPMX20_03046 0.49 -1.9 3,186,353 - MPMX20_03046 0.50 -1.1 3,186,355 + MPMX20_03046 0.50 -1.8 3,186,355 + MPMX20_03046 0.50 -1.1 3,186,355 + MPMX20_03046 0.50 +0.8 3,186,363 - MPMX20_03046 0.50 +0.2 3,186,457 - MPMX20_03046 0.55 -0.6 3,186,473 - MPMX20_03046 0.56 +0.1 3,186,473 - MPMX20_03046 0.56 -1.0 3,186,491 - MPMX20_03046 0.57 -0.4 3,186,500 + MPMX20_03046 0.58 +0.1 3,186,513 - MPMX20_03046 0.59 -0.6 3,186,513 - MPMX20_03046 0.59 -0.0 3,186,556 - MPMX20_03046 0.61 -1.6 3,186,576 - MPMX20_03046 0.62 +0.7 3,186,607 - MPMX20_03046 0.64 -0.6 3,186,638 + MPMX20_03046 0.65 -1.1 3,186,655 - MPMX20_03046 0.66 -0.6 3,186,702 + MPMX20_03046 0.69 -1.2 3,186,703 - MPMX20_03046 0.69 -0.8 3,186,728 - MPMX20_03046 0.70 -1.1 3,186,835 - MPMX20_03046 0.76 -1.9 3,186,925 + MPMX20_03046 0.81 -1.2 3,186,933 - MPMX20_03046 0.81 -3.1 3,186,977 - MPMX20_03046 0.84 -1.0 3,186,979 + MPMX20_03046 0.84 -0.6 3,186,987 - MPMX20_03046 0.84 -0.1 3,186,987 - MPMX20_03046 0.84 +0.4 3,186,989 + MPMX20_03046 0.84 -1.3 3,187,044 - MPMX20_03046 0.87 -1.4 3,187,044 - MPMX20_03046 0.87 -0.6 3,187,044 - MPMX20_03046 0.87 +0.2 3,187,049 + MPMX20_03046 0.87 -2.2 3,187,049 + MPMX20_03046 0.87 -1.6 3,187,049 + MPMX20_03046 0.87 +0.8 3,187,201 - -2.5 3,187,215 - -3.5 3,187,336 - -1.7 3,187,393 + MPMX20_03047 0.15 -0.6 3,187,401 + MPMX20_03047 0.17 -1.8 3,187,409 - MPMX20_03047 0.18 -0.2 3,187,409 - MPMX20_03047 0.18 +1.5 3,187,413 - MPMX20_03047 0.19 -1.6 3,187,460 - MPMX20_03047 0.27 -2.1 3,187,485 + MPMX20_03047 0.31 -1.2 3,187,493 - MPMX20_03047 0.33 -1.2 3,187,495 + MPMX20_03047 0.33 -1.6 3,187,495 + MPMX20_03047 0.33 -0.8 3,187,503 - MPMX20_03047 0.34 -2.4 3,187,573 + MPMX20_03047 0.46 +0.1 3,187,638 + MPMX20_03047 0.58 -1.7 3,187,782 + MPMX20_03047 0.82 -1.7 3,187,790 - MPMX20_03047 0.84 +0.4 3,187,796 + MPMX20_03047 0.85 -1.0 3,187,796 + MPMX20_03047 0.85 +0.5 3,187,814 + MPMX20_03047 0.88 +1.8 3,187,815 - MPMX20_03047 0.88 -1.6 3,187,815 - MPMX20_03047 0.88 -1.6 3,187,834 - -1.2 3,187,834 - -0.8 3,187,855 + +0.8 3,187,863 - +0.8 3,187,912 + -0.6 3,187,913 - -0.3 3,187,913 - +0.7 3,187,918 + -1.2 3,187,942 + -0.2 3,187,947 + +0.8 3,187,948 + -2.0 3,187,955 + -1.8 3,187,956 - +0.2 3,188,027 + +0.3 3,188,059 - MPMX20_03048 0.13 +3.3 3,188,066 - MPMX20_03048 0.14 +2.4 3,188,114 - MPMX20_03048 0.21 +0.2 3,188,160 - MPMX20_03048 0.29 -1.0 3,188,189 + MPMX20_03048 0.33 +2.3 3,188,227 - MPMX20_03048 0.39 -0.8 3,188,236 + MPMX20_03048 0.40 -0.4 3,188,236 + MPMX20_03048 0.40 -1.0 3,188,236 + MPMX20_03048 0.40 +0.1 3,188,236 + MPMX20_03048 0.40 -1.7 3,188,244 - MPMX20_03048 0.42 +1.2 3,188,244 - MPMX20_03048 0.42 +0.8 3,188,315 + MPMX20_03048 0.53 -0.2 3,188,323 - MPMX20_03048 0.54 -1.2 3,188,323 - MPMX20_03048 0.54 -0.8 3,188,323 - MPMX20_03048 0.54 -0.3 3,188,323 - MPMX20_03048 0.54 -0.6 3,188,328 - MPMX20_03048 0.55 +1.8 3,188,393 + MPMX20_03048 0.65 +0.8 3,188,393 + MPMX20_03048 0.65 +0.2 3,188,393 + MPMX20_03048 0.65 -1.4 3,188,393 + MPMX20_03048 0.65 +0.3 3,188,393 + MPMX20_03048 0.65 -0.3 3,188,393 + MPMX20_03048 0.65 -0.6 3,188,401 - MPMX20_03048 0.66 -0.3 3,188,416 + MPMX20_03048 0.69 -0.6 3,188,456 + MPMX20_03048 0.75 -0.2 3,188,464 - MPMX20_03048 0.76 -1.3 3,188,464 - MPMX20_03048 0.76 -0.5 3,188,464 - MPMX20_03048 0.76 -0.8 3,188,479 + MPMX20_03048 0.78 +1.1 3,188,501 - MPMX20_03048 0.82 -0.7 3,188,513 - MPMX20_03048 0.84 -0.6 3,188,522 - MPMX20_03048 0.85 +0.0 3,188,524 + MPMX20_03048 0.85 -0.0 3,188,524 + MPMX20_03048 0.85 +0.8 3,188,524 - MPMX20_03048 0.85 -0.1 3,188,545 + MPMX20_03048 0.89 +0.1 3,188,599 + +0.3 3,188,607 - -0.3 3,188,662 - -1.9 3,188,662 - -0.3 3,188,662 - +0.1 3,188,662 - +0.4 3,188,667 - -0.2 3,188,701 + +0.3 3,188,701 + +1.4 3,188,701 + -0.1 3,188,701 + -1.5 3,188,701 + -2.3 3,188,727 + +0.5 3,188,727 + +0.3 3,188,727 + -0.8 3,188,727 + +0.1 3,188,727 + -2.0 3,188,731 - -0.9 3,188,735 - -0.4 3,188,737 + -0.6
Or see this region's nucleotide sequence