Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02769

Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02767 and MPMX20_02768 are separated by 80 nucleotidesMPMX20_02768 and MPMX20_02769 are separated by 34 nucleotidesMPMX20_02769 and MPMX20_02770 are separated by 27 nucleotidesMPMX20_02770 and MPMX20_02771 are separated by 1 nucleotides MPMX20_02767: MPMX20_02767 - Holliday junction ATP-dependent DNA helicase RuvA, at 2,922,705 to 2,923,316 _02767 MPMX20_02768: MPMX20_02768 - Crossover junction endodeoxyribonuclease RuvC, at 2,923,397 to 2,923,918 _02768 MPMX20_02769: MPMX20_02769 - putative transcriptional regulatory protein YebC, at 2,923,953 to 2,924,693 _02769 MPMX20_02770: MPMX20_02770 - Dihydroneopterin triphosphate diphosphatase, at 2,924,721 to 2,925,164 _02770 MPMX20_02771: MPMX20_02771 - Aspartate--tRNA ligase, at 2,925,166 to 2,926,953 _02771 Position (kb) 2923 2924 2925Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2922.979 kb on + strand, within MPMX20_02767at 2922.987 kb on - strand, within MPMX20_02767at 2923.001 kb on - strand, within MPMX20_02767at 2923.034 kb on - strand, within MPMX20_02767at 2923.158 kb on - strand, within MPMX20_02767at 2923.242 kb on + strand, within MPMX20_02767at 2923.268 kb on - strandat 2923.331 kb on - strandat 2923.407 kb on - strandat 2923.447 kb on - strandat 2923.447 kb on - strandat 2923.471 kb on + strand, within MPMX20_02768at 2923.479 kb on - strand, within MPMX20_02768at 2923.526 kb on + strand, within MPMX20_02768at 2923.526 kb on + strand, within MPMX20_02768at 2923.532 kb on - strand, within MPMX20_02768at 2923.720 kb on - strand, within MPMX20_02768at 2923.783 kb on - strand, within MPMX20_02768at 2923.783 kb on - strand, within MPMX20_02768at 2923.902 kb on - strandat 2923.928 kb on + strandat 2924.317 kb on + strand, within MPMX20_02769at 2924.414 kb on + strand, within MPMX20_02769at 2924.421 kb on + strand, within MPMX20_02769at 2924.527 kb on + strand, within MPMX20_02769at 2924.535 kb on - strand, within MPMX20_02769at 2924.577 kb on + strand, within MPMX20_02769at 2924.577 kb on + strand, within MPMX20_02769at 2924.650 kb on + strandat 2924.658 kb on - strandat 2924.668 kb on - strandat 2924.668 kb on - strandat 2924.780 kb on + strand, within MPMX20_02770at 2924.783 kb on - strand, within MPMX20_02770at 2924.788 kb on - strand, within MPMX20_02770at 2924.788 kb on - strand, within MPMX20_02770at 2924.944 kb on - strand, within MPMX20_02770at 2924.962 kb on - strand, within MPMX20_02770at 2924.989 kb on - strand, within MPMX20_02770at 2925.041 kb on + strand, within MPMX20_02770at 2925.041 kb on + strand, within MPMX20_02770at 2925.049 kb on - strand, within MPMX20_02770at 2925.049 kb on - strand, within MPMX20_02770at 2925.151 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,922,979 + MPMX20_02767 0.45 -2.5
2,922,987 - MPMX20_02767 0.46 -0.9
2,923,001 - MPMX20_02767 0.48 -3.4
2,923,034 - MPMX20_02767 0.54 -0.5
2,923,158 - MPMX20_02767 0.74 -2.5
2,923,242 + MPMX20_02767 0.88 -0.9
2,923,268 - -2.8
2,923,331 - -0.1
2,923,407 - -0.6
2,923,447 - -2.0
2,923,447 - -1.3
2,923,471 + MPMX20_02768 0.14 -1.1
2,923,479 - MPMX20_02768 0.16 -2.8
2,923,526 + MPMX20_02768 0.25 -0.5
2,923,526 + MPMX20_02768 0.25 -0.9
2,923,532 - MPMX20_02768 0.26 -0.9
2,923,720 - MPMX20_02768 0.62 -1.7
2,923,783 - MPMX20_02768 0.74 -0.1
2,923,783 - MPMX20_02768 0.74 -0.5
2,923,902 - -0.5
2,923,928 + +0.4
2,924,317 + MPMX20_02769 0.49 -0.9
2,924,414 + MPMX20_02769 0.62 -1.3
2,924,421 + MPMX20_02769 0.63 -0.4
2,924,527 + MPMX20_02769 0.77 +0.9
2,924,535 - MPMX20_02769 0.79 -0.1
2,924,577 + MPMX20_02769 0.84 -0.5
2,924,577 + MPMX20_02769 0.84 -1.1
2,924,650 + -0.9
2,924,658 - +0.2
2,924,668 - -0.2
2,924,668 - +0.6
2,924,780 + MPMX20_02770 0.13 +1.8
2,924,783 - MPMX20_02770 0.14 -0.1
2,924,788 - MPMX20_02770 0.15 -2.1
2,924,788 - MPMX20_02770 0.15 -0.1
2,924,944 - MPMX20_02770 0.50 -0.0
2,924,962 - MPMX20_02770 0.54 +0.4
2,924,989 - MPMX20_02770 0.60 -1.5
2,925,041 + MPMX20_02770 0.72 -0.8
2,925,041 + MPMX20_02770 0.72 -2.2
2,925,049 - MPMX20_02770 0.74 +0.4
2,925,049 - MPMX20_02770 0.74 +1.2
2,925,151 + +1.9

Or see this region's nucleotide sequence