Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02737

Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02736 and MPMX20_02737 are separated by 193 nucleotidesMPMX20_02737 and MPMX20_02738 are separated by 19 nucleotidesMPMX20_02738 and MPMX20_02739 are separated by 96 nucleotides MPMX20_02736: MPMX20_02736 - Protease HtpX, at 2,889,514 to 2,890,395 _02736 MPMX20_02737: MPMX20_02737 - Tail-specific protease, at 2,890,589 to 2,892,637 _02737 MPMX20_02738: MPMX20_02738 - RNA chaperone ProQ, at 2,892,657 to 2,893,343 _02738 MPMX20_02739: MPMX20_02739 - Free methionine-R-sulfoxide reductase, at 2,893,440 to 2,893,937 _02739 Position (kb) 2890 2891 2892 2893Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2889.720 kb on - strand, within MPMX20_02736at 2889.738 kb on + strand, within MPMX20_02736at 2889.761 kb on + strand, within MPMX20_02736at 2889.827 kb on + strand, within MPMX20_02736at 2889.888 kb on + strand, within MPMX20_02736at 2889.934 kb on - strand, within MPMX20_02736at 2889.936 kb on + strand, within MPMX20_02736at 2890.135 kb on - strand, within MPMX20_02736at 2890.178 kb on - strand, within MPMX20_02736at 2890.206 kb on - strand, within MPMX20_02736at 2890.265 kb on + strand, within MPMX20_02736at 2890.281 kb on - strand, within MPMX20_02736at 2890.296 kb on + strand, within MPMX20_02736at 2890.803 kb on + strand, within MPMX20_02737at 2890.868 kb on - strand, within MPMX20_02737at 2890.927 kb on + strand, within MPMX20_02737at 2890.927 kb on + strand, within MPMX20_02737at 2890.935 kb on - strand, within MPMX20_02737at 2890.935 kb on - strand, within MPMX20_02737at 2891.013 kb on - strand, within MPMX20_02737at 2891.040 kb on - strand, within MPMX20_02737at 2891.070 kb on + strand, within MPMX20_02737at 2891.070 kb on + strand, within MPMX20_02737at 2891.070 kb on + strand, within MPMX20_02737at 2891.078 kb on - strand, within MPMX20_02737at 2891.078 kb on - strand, within MPMX20_02737at 2891.120 kb on + strand, within MPMX20_02737at 2891.120 kb on + strand, within MPMX20_02737at 2891.120 kb on + strand, within MPMX20_02737at 2891.125 kb on + strand, within MPMX20_02737at 2891.145 kb on - strand, within MPMX20_02737at 2891.195 kb on - strand, within MPMX20_02737at 2891.234 kb on - strand, within MPMX20_02737at 2891.241 kb on + strand, within MPMX20_02737at 2891.252 kb on - strand, within MPMX20_02737at 2891.252 kb on - strand, within MPMX20_02737at 2891.362 kb on - strand, within MPMX20_02737at 2891.440 kb on + strand, within MPMX20_02737at 2891.649 kb on - strand, within MPMX20_02737at 2891.695 kb on + strand, within MPMX20_02737at 2891.712 kb on + strand, within MPMX20_02737at 2891.712 kb on + strand, within MPMX20_02737at 2891.712 kb on + strand, within MPMX20_02737at 2891.720 kb on - strand, within MPMX20_02737at 2891.720 kb on - strand, within MPMX20_02737at 2891.725 kb on - strand, within MPMX20_02737at 2891.735 kb on + strand, within MPMX20_02737at 2891.760 kb on + strand, within MPMX20_02737at 2891.768 kb on - strand, within MPMX20_02737at 2891.768 kb on - strand, within MPMX20_02737at 2891.768 kb on - strand, within MPMX20_02737at 2891.773 kb on - strand, within MPMX20_02737at 2891.774 kb on + strand, within MPMX20_02737at 2891.808 kb on - strand, within MPMX20_02737at 2891.808 kb on - strand, within MPMX20_02737at 2891.852 kb on + strand, within MPMX20_02737at 2891.879 kb on + strand, within MPMX20_02737at 2891.930 kb on - strand, within MPMX20_02737at 2891.940 kb on - strand, within MPMX20_02737at 2891.940 kb on - strand, within MPMX20_02737at 2891.940 kb on - strand, within MPMX20_02737at 2892.026 kb on - strand, within MPMX20_02737at 2892.026 kb on - strand, within MPMX20_02737at 2892.103 kb on + strand, within MPMX20_02737at 2892.103 kb on + strand, within MPMX20_02737at 2892.103 kb on + strand, within MPMX20_02737at 2892.103 kb on + strand, within MPMX20_02737at 2892.103 kb on + strand, within MPMX20_02737at 2892.103 kb on + strand, within MPMX20_02737at 2892.103 kb on + strand, within MPMX20_02737at 2892.103 kb on + strand, within MPMX20_02737at 2892.103 kb on + strand, within MPMX20_02737at 2892.103 kb on + strand, within MPMX20_02737at 2892.103 kb on + strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.111 kb on - strand, within MPMX20_02737at 2892.166 kb on - strand, within MPMX20_02737at 2892.196 kb on + strand, within MPMX20_02737at 2892.204 kb on - strand, within MPMX20_02737at 2892.204 kb on - strand, within MPMX20_02737at 2892.204 kb on - strand, within MPMX20_02737at 2892.305 kb on - strand, within MPMX20_02737at 2892.305 kb on - strand, within MPMX20_02737at 2892.307 kb on + strand, within MPMX20_02737at 2892.307 kb on + strand, within MPMX20_02737at 2892.315 kb on - strand, within MPMX20_02737at 2892.315 kb on - strand, within MPMX20_02737at 2892.329 kb on + strand, within MPMX20_02737at 2892.345 kb on + strand, within MPMX20_02737at 2892.364 kb on + strand, within MPMX20_02737at 2892.409 kb on + strand, within MPMX20_02737at 2892.430 kb on - strand, within MPMX20_02737at 2892.485 kb on + strandat 2892.509 kb on - strandat 2892.568 kb on - strandat 2892.594 kb on + strandat 2892.663 kb on + strandat 2892.703 kb on - strandat 2892.708 kb on - strandat 2892.841 kb on - strand, within MPMX20_02738at 2892.854 kb on + strand, within MPMX20_02738at 2892.917 kb on - strand, within MPMX20_02738at 2893.040 kb on + strand, within MPMX20_02738at 2893.046 kb on - strand, within MPMX20_02738at 2893.078 kb on + strand, within MPMX20_02738at 2893.133 kb on + strand, within MPMX20_02738at 2893.133 kb on + strand, within MPMX20_02738at 2893.133 kb on + strand, within MPMX20_02738at 2893.141 kb on - strand, within MPMX20_02738at 2893.141 kb on - strand, within MPMX20_02738at 2893.141 kb on - strand, within MPMX20_02738at 2893.141 kb on - strand, within MPMX20_02738at 2893.141 kb on - strand, within MPMX20_02738at 2893.152 kb on + strand, within MPMX20_02738at 2893.190 kb on + strand, within MPMX20_02738at 2893.251 kb on + strand, within MPMX20_02738at 2893.259 kb on - strand, within MPMX20_02738at 2893.267 kb on + strand, within MPMX20_02738at 2893.383 kb on + strandat 2893.383 kb on + strandat 2893.391 kb on - strandat 2893.429 kb on - strandat 2893.514 kb on + strand, within MPMX20_02739at 2893.518 kb on - strand, within MPMX20_02739at 2893.520 kb on + strand, within MPMX20_02739at 2893.530 kb on + strand, within MPMX20_02739at 2893.537 kb on + strand, within MPMX20_02739at 2893.537 kb on + strand, within MPMX20_02739at 2893.545 kb on - strand, within MPMX20_02739at 2893.548 kb on + strand, within MPMX20_02739at 2893.556 kb on - strand, within MPMX20_02739

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
2,889,720 - MPMX20_02736 0.23 +0.1
2,889,738 + MPMX20_02736 0.25 +0.2
2,889,761 + MPMX20_02736 0.28 +0.9
2,889,827 + MPMX20_02736 0.35 -1.1
2,889,888 + MPMX20_02736 0.42 +1.9
2,889,934 - MPMX20_02736 0.48 -1.1
2,889,936 + MPMX20_02736 0.48 -1.0
2,890,135 - MPMX20_02736 0.70 -1.3
2,890,178 - MPMX20_02736 0.75 -0.3
2,890,206 - MPMX20_02736 0.78 -2.3
2,890,265 + MPMX20_02736 0.85 +0.9
2,890,281 - MPMX20_02736 0.87 -1.1
2,890,296 + MPMX20_02736 0.89 -0.0
2,890,803 + MPMX20_02737 0.10 -2.6
2,890,868 - MPMX20_02737 0.14 -3.0
2,890,927 + MPMX20_02737 0.16 -3.2
2,890,927 + MPMX20_02737 0.16 -3.6
2,890,935 - MPMX20_02737 0.17 -2.5
2,890,935 - MPMX20_02737 0.17 -1.8
2,891,013 - MPMX20_02737 0.21 -4.2
2,891,040 - MPMX20_02737 0.22 -2.1
2,891,070 + MPMX20_02737 0.23 -1.2
2,891,070 + MPMX20_02737 0.23 -4.3
2,891,070 + MPMX20_02737 0.23 -0.1
2,891,078 - MPMX20_02737 0.24 -2.0
2,891,078 - MPMX20_02737 0.24 -3.8
2,891,120 + MPMX20_02737 0.26 -4.1
2,891,120 + MPMX20_02737 0.26 -2.6
2,891,120 + MPMX20_02737 0.26 -1.6
2,891,125 + MPMX20_02737 0.26 -2.6
2,891,145 - MPMX20_02737 0.27 -1.8
2,891,195 - MPMX20_02737 0.30 -3.8
2,891,234 - MPMX20_02737 0.31 -1.6
2,891,241 + MPMX20_02737 0.32 -0.5
2,891,252 - MPMX20_02737 0.32 -2.3
2,891,252 - MPMX20_02737 0.32 -3.9
2,891,362 - MPMX20_02737 0.38 -3.5
2,891,440 + MPMX20_02737 0.42 -2.9
2,891,649 - MPMX20_02737 0.52 -0.7
2,891,695 + MPMX20_02737 0.54 -2.0
2,891,712 + MPMX20_02737 0.55 -1.4
2,891,712 + MPMX20_02737 0.55 -2.2
2,891,712 + MPMX20_02737 0.55 -2.6
2,891,720 - MPMX20_02737 0.55 -1.8
2,891,720 - MPMX20_02737 0.55 -1.2
2,891,725 - MPMX20_02737 0.55 -2.8
2,891,735 + MPMX20_02737 0.56 -4.1
2,891,760 + MPMX20_02737 0.57 -1.6
2,891,768 - MPMX20_02737 0.58 -4.2
2,891,768 - MPMX20_02737 0.58 -3.4
2,891,768 - MPMX20_02737 0.58 -3.4
2,891,773 - MPMX20_02737 0.58 -3.8
2,891,774 + MPMX20_02737 0.58 -2.9
2,891,808 - MPMX20_02737 0.59 -1.6
2,891,808 - MPMX20_02737 0.59 -2.2
2,891,852 + MPMX20_02737 0.62 -2.7
2,891,879 + MPMX20_02737 0.63 -1.8
2,891,930 - MPMX20_02737 0.65 -4.5
2,891,940 - MPMX20_02737 0.66 -0.8
2,891,940 - MPMX20_02737 0.66 -4.2
2,891,940 - MPMX20_02737 0.66 -2.2
2,892,026 - MPMX20_02737 0.70 -3.3
2,892,026 - MPMX20_02737 0.70 -3.2
2,892,103 + MPMX20_02737 0.74 -2.9
2,892,103 + MPMX20_02737 0.74 -3.7
2,892,103 + MPMX20_02737 0.74 -2.7
2,892,103 + MPMX20_02737 0.74 -0.4
2,892,103 + MPMX20_02737 0.74 -2.9
2,892,103 + MPMX20_02737 0.74 -3.4
2,892,103 + MPMX20_02737 0.74 -3.1
2,892,103 + MPMX20_02737 0.74 -0.9
2,892,103 + MPMX20_02737 0.74 -2.9
2,892,103 + MPMX20_02737 0.74 -4.1
2,892,103 + MPMX20_02737 0.74 -3.2
2,892,111 - MPMX20_02737 0.74 -2.8
2,892,111 - MPMX20_02737 0.74 -2.6
2,892,111 - MPMX20_02737 0.74 -1.5
2,892,111 - MPMX20_02737 0.74 -4.2
2,892,111 - MPMX20_02737 0.74 -2.3
2,892,111 - MPMX20_02737 0.74 -2.0
2,892,111 - MPMX20_02737 0.74 -3.2
2,892,111 - MPMX20_02737 0.74 -2.4
2,892,111 - MPMX20_02737 0.74 -2.0
2,892,111 - MPMX20_02737 0.74 -2.9
2,892,111 - MPMX20_02737 0.74 -1.7
2,892,111 - MPMX20_02737 0.74 -3.4
2,892,111 - MPMX20_02737 0.74 -3.0
2,892,111 - MPMX20_02737 0.74 -3.9
2,892,111 - MPMX20_02737 0.74 -3.2
2,892,111 - MPMX20_02737 0.74 -2.4
2,892,166 - MPMX20_02737 0.77 -2.8
2,892,196 + MPMX20_02737 0.78 -0.6
2,892,204 - MPMX20_02737 0.79 -2.1
2,892,204 - MPMX20_02737 0.79 -3.0
2,892,204 - MPMX20_02737 0.79 -2.1
2,892,305 - MPMX20_02737 0.84 -1.5
2,892,305 - MPMX20_02737 0.84 -1.8
2,892,307 + MPMX20_02737 0.84 -2.8
2,892,307 + MPMX20_02737 0.84 -1.4
2,892,315 - MPMX20_02737 0.84 -3.5
2,892,315 - MPMX20_02737 0.84 -3.2
2,892,329 + MPMX20_02737 0.85 -3.3
2,892,345 + MPMX20_02737 0.86 -3.0
2,892,364 + MPMX20_02737 0.87 -2.2
2,892,409 + MPMX20_02737 0.89 -2.4
2,892,430 - MPMX20_02737 0.90 -2.8
2,892,485 + -3.9
2,892,509 - -2.2
2,892,568 - -2.0
2,892,594 + -3.1
2,892,663 + -0.5
2,892,703 - -0.2
2,892,708 - +0.5
2,892,841 - MPMX20_02738 0.27 +1.3
2,892,854 + MPMX20_02738 0.29 -0.7
2,892,917 - MPMX20_02738 0.38 +0.9
2,893,040 + MPMX20_02738 0.56 +3.7
2,893,046 - MPMX20_02738 0.57 -2.6
2,893,078 + MPMX20_02738 0.61 -4.6
2,893,133 + MPMX20_02738 0.69 -3.3
2,893,133 + MPMX20_02738 0.69 -1.8
2,893,133 + MPMX20_02738 0.69 -1.9
2,893,141 - MPMX20_02738 0.70 -1.5
2,893,141 - MPMX20_02738 0.70 -0.6
2,893,141 - MPMX20_02738 0.70 -0.0
2,893,141 - MPMX20_02738 0.70 -0.9
2,893,141 - MPMX20_02738 0.70 -2.3
2,893,152 + MPMX20_02738 0.72 -1.9
2,893,190 + MPMX20_02738 0.78 -0.5
2,893,251 + MPMX20_02738 0.86 +0.3
2,893,259 - MPMX20_02738 0.88 -0.7
2,893,267 + MPMX20_02738 0.89 -0.7
2,893,383 + -1.6
2,893,383 + -0.4
2,893,391 - -0.1
2,893,429 - -0.3
2,893,514 + MPMX20_02739 0.15 +0.3
2,893,518 - MPMX20_02739 0.16 -2.6
2,893,520 + MPMX20_02739 0.16 +0.9
2,893,530 + MPMX20_02739 0.18 +1.5
2,893,537 + MPMX20_02739 0.19 -0.6
2,893,537 + MPMX20_02739 0.19 -3.5
2,893,545 - MPMX20_02739 0.21 +1.4
2,893,548 + MPMX20_02739 0.22 -0.9
2,893,556 - MPMX20_02739 0.23 -2.3

Or see this region's nucleotide sequence