Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01357

Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01356 and MPMX20_01357 overlap by 1 nucleotidesMPMX20_01357 and MPMX20_01358 are separated by 83 nucleotidesMPMX20_01358 and MPMX20_01359 are separated by 169 nucleotides MPMX20_01356: MPMX20_01356 - Succinate--CoA ligase [ADP-forming] subunit beta, at 1,421,351 to 1,422,517 _01356 MPMX20_01357: MPMX20_01357 - Succinate--CoA ligase [ADP-forming] subunit alpha, at 1,422,517 to 1,423,386 _01357 MPMX20_01358: MPMX20_01358 - Mannosyl-D-glycerate transport/metabolism system repressor MngR, at 1,423,470 to 1,424,186 _01358 MPMX20_01359: MPMX20_01359 - PTS system 2-O-alpha-mannosyl-D-glycerate-specific EIIABC component, at 1,424,356 to 1,426,272 _01359 Position (kb) 1422 1423 1424Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1421.526 kb on + strand, within MPMX20_01356at 1421.526 kb on + strand, within MPMX20_01356at 1421.534 kb on - strand, within MPMX20_01356at 1421.693 kb on - strand, within MPMX20_01356at 1421.769 kb on + strand, within MPMX20_01356at 1421.935 kb on + strand, within MPMX20_01356at 1421.961 kb on - strand, within MPMX20_01356at 1421.966 kb on - strand, within MPMX20_01356at 1422.009 kb on + strand, within MPMX20_01356at 1422.063 kb on - strand, within MPMX20_01356at 1422.094 kb on - strand, within MPMX20_01356at 1422.095 kb on + strand, within MPMX20_01356at 1422.100 kb on + strand, within MPMX20_01356at 1422.113 kb on - strand, within MPMX20_01356at 1422.149 kb on + strand, within MPMX20_01356at 1422.149 kb on + strand, within MPMX20_01356at 1422.174 kb on + strand, within MPMX20_01356at 1422.174 kb on + strand, within MPMX20_01356at 1422.184 kb on + strand, within MPMX20_01356at 1422.222 kb on - strand, within MPMX20_01356at 1422.230 kb on + strand, within MPMX20_01356at 1422.238 kb on - strand, within MPMX20_01356at 1422.280 kb on + strand, within MPMX20_01356at 1422.280 kb on + strand, within MPMX20_01356at 1422.280 kb on + strand, within MPMX20_01356at 1422.288 kb on - strand, within MPMX20_01356at 1422.375 kb on + strand, within MPMX20_01356at 1422.409 kb on - strandat 1422.416 kb on - strandat 1422.506 kb on - strandat 1422.540 kb on + strandat 1422.561 kb on - strandat 1422.675 kb on + strand, within MPMX20_01357at 1422.675 kb on + strand, within MPMX20_01357at 1422.695 kb on + strand, within MPMX20_01357at 1422.800 kb on - strand, within MPMX20_01357at 1422.800 kb on - strand, within MPMX20_01357at 1422.857 kb on + strand, within MPMX20_01357at 1422.885 kb on - strand, within MPMX20_01357at 1422.902 kb on + strand, within MPMX20_01357at 1422.910 kb on - strand, within MPMX20_01357at 1423.116 kb on + strand, within MPMX20_01357at 1423.253 kb on - strand, within MPMX20_01357at 1423.292 kb on - strand, within MPMX20_01357at 1423.391 kb on + strandat 1423.403 kb on + strandat 1423.409 kb on - strandat 1423.521 kb on - strandat 1423.630 kb on - strand, within MPMX20_01358at 1423.630 kb on - strand, within MPMX20_01358at 1423.721 kb on + strand, within MPMX20_01358at 1423.731 kb on - strand, within MPMX20_01358at 1423.733 kb on + strand, within MPMX20_01358at 1423.875 kb on - strand, within MPMX20_01358at 1423.904 kb on - strand, within MPMX20_01358at 1423.997 kb on + strand, within MPMX20_01358at 1424.066 kb on + strand, within MPMX20_01358at 1424.066 kb on + strand, within MPMX20_01358at 1424.190 kb on - strandat 1424.376 kb on - strandat 1424.376 kb on - strandat 1424.376 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
1,421,526 + MPMX20_01356 0.15 -1.4
1,421,526 + MPMX20_01356 0.15 -1.1
1,421,534 - MPMX20_01356 0.16 -0.9
1,421,693 - MPMX20_01356 0.29 -0.6
1,421,769 + MPMX20_01356 0.36 -0.3
1,421,935 + MPMX20_01356 0.50 -3.2
1,421,961 - MPMX20_01356 0.52 -0.0
1,421,966 - MPMX20_01356 0.53 -1.4
1,422,009 + MPMX20_01356 0.56 -1.7
1,422,063 - MPMX20_01356 0.61 -2.4
1,422,094 - MPMX20_01356 0.64 -2.1
1,422,095 + MPMX20_01356 0.64 -2.2
1,422,100 + MPMX20_01356 0.64 -0.9
1,422,113 - MPMX20_01356 0.65 -1.6
1,422,149 + MPMX20_01356 0.68 -1.8
1,422,149 + MPMX20_01356 0.68 -1.5
1,422,174 + MPMX20_01356 0.71 +0.1
1,422,174 + MPMX20_01356 0.71 -0.5
1,422,184 + MPMX20_01356 0.71 -1.7
1,422,222 - MPMX20_01356 0.75 -1.0
1,422,230 + MPMX20_01356 0.75 -1.1
1,422,238 - MPMX20_01356 0.76 -1.3
1,422,280 + MPMX20_01356 0.80 -2.3
1,422,280 + MPMX20_01356 0.80 -2.2
1,422,280 + MPMX20_01356 0.80 -0.7
1,422,288 - MPMX20_01356 0.80 +3.9
1,422,375 + MPMX20_01356 0.88 -0.9
1,422,409 - -0.3
1,422,416 - -0.4
1,422,506 - +1.7
1,422,540 + +0.1
1,422,561 - -0.3
1,422,675 + MPMX20_01357 0.18 -1.4
1,422,675 + MPMX20_01357 0.18 -0.7
1,422,695 + MPMX20_01357 0.20 -1.1
1,422,800 - MPMX20_01357 0.33 -2.4
1,422,800 - MPMX20_01357 0.33 -0.8
1,422,857 + MPMX20_01357 0.39 -3.6
1,422,885 - MPMX20_01357 0.42 -1.4
1,422,902 + MPMX20_01357 0.44 -1.3
1,422,910 - MPMX20_01357 0.45 +0.3
1,423,116 + MPMX20_01357 0.69 -0.7
1,423,253 - MPMX20_01357 0.85 -0.7
1,423,292 - MPMX20_01357 0.89 -1.2
1,423,391 + -0.9
1,423,403 + -1.3
1,423,409 - -0.4
1,423,521 - +0.2
1,423,630 - MPMX20_01358 0.22 +0.9
1,423,630 - MPMX20_01358 0.22 -0.4
1,423,721 + MPMX20_01358 0.35 +0.4
1,423,731 - MPMX20_01358 0.36 -1.0
1,423,733 + MPMX20_01358 0.37 -1.1
1,423,875 - MPMX20_01358 0.56 -0.8
1,423,904 - MPMX20_01358 0.61 -0.1
1,423,997 + MPMX20_01358 0.74 +0.9
1,424,066 + MPMX20_01358 0.83 +1.1
1,424,066 + MPMX20_01358 0.83 +3.1
1,424,190 - -0.3
1,424,376 - -1.1
1,424,376 - +1.3
1,424,376 - -1.5

Or see this region's nucleotide sequence