Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00785

Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00784 and MPMX20_00785 overlap by 8 nucleotidesMPMX20_00785 and MPMX20_00786 are separated by 1 nucleotidesMPMX20_00786 and MPMX20_00787 overlap by 4 nucleotides MPMX20_00784: MPMX20_00784 - UDP-N-acetylmuramate--L-alanine ligase, at 819,841 to 821,316 _00784 MPMX20_00785: MPMX20_00785 - D-alanine--D-alanine ligase B, at 821,309 to 822,229 _00785 MPMX20_00786: MPMX20_00786 - Cell division protein FtsQ, at 822,231 to 823,073 _00786 MPMX20_00787: MPMX20_00787 - Cell division protein FtsA, at 823,070 to 824,326 _00787 Position (kb) 821 822 823Strain fitness (log2 ratio) -2 -1 0 1 2at 821.290 kb on + strandat 821.299 kb on + strandat 821.455 kb on + strand, within MPMX20_00785at 821.520 kb on + strand, within MPMX20_00785at 821.594 kb on + strand, within MPMX20_00785at 821.623 kb on + strand, within MPMX20_00785at 821.630 kb on + strand, within MPMX20_00785at 821.709 kb on + strand, within MPMX20_00785at 821.753 kb on + strand, within MPMX20_00785at 821.770 kb on + strand, within MPMX20_00785at 821.770 kb on + strand, within MPMX20_00785at 822.057 kb on + strand, within MPMX20_00785at 822.214 kb on + strandat 822.233 kb on + strandat 823.052 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
821,290 + +0.5
821,299 + -0.0
821,455 + MPMX20_00785 0.16 -2.2
821,520 + MPMX20_00785 0.23 +0.6
821,594 + MPMX20_00785 0.31 -2.2
821,623 + MPMX20_00785 0.34 +0.8
821,630 + MPMX20_00785 0.35 -0.0
821,709 + MPMX20_00785 0.43 -1.1
821,753 + MPMX20_00785 0.48 +0.6
821,770 + MPMX20_00785 0.50 -1.7
821,770 + MPMX20_00785 0.50 -0.7
822,057 + MPMX20_00785 0.81 -0.5
822,214 + +0.3
822,233 + +1.1
823,052 + +2.1

Or see this region's nucleotide sequence