Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00477 and MPMX20_00478 are separated by 6 nucleotides MPMX20_00478 and MPMX20_00479 are separated by 4 nucleotides MPMX20_00479 and MPMX20_00480 are separated by 41 nucleotides MPMX20_00480 and MPMX20_00481 are separated by 150 nucleotides
MPMX20_00477: MPMX20_00477 - 30S ribosomal protein S6, at 492,023 to 492,418
_00477
MPMX20_00478: MPMX20_00478 - Primosomal replication protein N, at 492,425 to 492,739
_00478
MPMX20_00479: MPMX20_00479 - 30S ribosomal protein S18, at 492,744 to 492,971
_00479
MPMX20_00480: MPMX20_00480 - 50S ribosomal protein L9, at 493,013 to 493,462
_00480
MPMX20_00481: MPMX20_00481 - hypothetical protein, at 493,613 to 494,542
_00481
Position (kb) 493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 492.280 kb on + strand, within MPMX20_00477 at 492.328 kb on + strand, within MPMX20_00477 at 492.445 kb on + strand at 493.043 kb on + strand at 493.066 kb on + strand, within MPMX20_00480 at 493.072 kb on + strand, within MPMX20_00480 at 493.111 kb on + strand, within MPMX20_00480 at 493.111 kb on + strand, within MPMX20_00480 at 493.220 kb on + strand, within MPMX20_00480 at 493.378 kb on + strand, within MPMX20_00480 at 493.528 kb on - strand at 493.533 kb on + strand at 493.647 kb on + strand at 493.655 kb on - strand at 493.658 kb on + strand at 493.658 kb on + strand at 493.662 kb on + strand at 493.666 kb on - strand at 493.666 kb on - strand at 493.666 kb on - strand at 493.666 kb on - strand at 493.695 kb on - strand at 493.701 kb on - strand at 493.722 kb on + strand, within MPMX20_00481 at 493.732 kb on + strand, within MPMX20_00481 at 493.746 kb on - strand, within MPMX20_00481 at 493.773 kb on - strand, within MPMX20_00481 at 493.826 kb on + strand, within MPMX20_00481 at 493.829 kb on - strand, within MPMX20_00481 at 493.829 kb on - strand, within MPMX20_00481 at 493.831 kb on + strand, within MPMX20_00481 at 493.831 kb on + strand, within MPMX20_00481 at 493.857 kb on - strand, within MPMX20_00481 at 493.889 kb on - strand, within MPMX20_00481 at 493.914 kb on + strand, within MPMX20_00481 at 493.941 kb on - strand, within MPMX20_00481 at 494.021 kb on + strand, within MPMX20_00481 at 494.054 kb on + strand, within MPMX20_00481 at 494.074 kb on - strand, within MPMX20_00481 at 494.097 kb on + strand, within MPMX20_00481 at 494.126 kb on + strand, within MPMX20_00481 at 494.134 kb on - strand, within MPMX20_00481 at 494.151 kb on + strand, within MPMX20_00481 at 494.151 kb on + strand, within MPMX20_00481 at 494.159 kb on - strand, within MPMX20_00481 at 494.159 kb on - strand, within MPMX20_00481 at 494.199 kb on - strand, within MPMX20_00481 at 494.201 kb on - strand, within MPMX20_00481 at 494.291 kb on + strand, within MPMX20_00481 at 494.315 kb on + strand, within MPMX20_00481 at 494.315 kb on + strand, within MPMX20_00481 at 494.315 kb on + strand, within MPMX20_00481 at 494.315 kb on + strand, within MPMX20_00481 at 494.323 kb on - strand, within MPMX20_00481 at 494.340 kb on + strand, within MPMX20_00481 at 494.348 kb on + strand, within MPMX20_00481 at 494.359 kb on + strand, within MPMX20_00481 at 494.402 kb on + strand, within MPMX20_00481
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_126 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 492,280 + MPMX20_00477 0.65 +0.4 492,328 + MPMX20_00477 0.77 +0.7 492,445 + -0.2 493,043 + +3.4 493,066 + MPMX20_00480 0.12 -1.8 493,072 + MPMX20_00480 0.13 -1.3 493,111 + MPMX20_00480 0.22 -2.9 493,111 + MPMX20_00480 0.22 -0.9 493,220 + MPMX20_00480 0.46 -0.8 493,378 + MPMX20_00480 0.81 -0.5 493,528 - +0.2 493,533 + -0.2 493,647 + +0.4 493,655 - +0.1 493,658 + -1.4 493,658 + -0.1 493,662 + -1.8 493,666 - +0.3 493,666 - -1.8 493,666 - +0.6 493,666 - +0.9 493,695 - -0.6 493,701 - -0.5 493,722 + MPMX20_00481 0.12 +0.0 493,732 + MPMX20_00481 0.13 -1.8 493,746 - MPMX20_00481 0.14 +0.3 493,773 - MPMX20_00481 0.17 -0.4 493,826 + MPMX20_00481 0.23 +0.0 493,829 - MPMX20_00481 0.23 -0.8 493,829 - MPMX20_00481 0.23 +0.5 493,831 + MPMX20_00481 0.23 -0.2 493,831 + MPMX20_00481 0.23 +0.3 493,857 - MPMX20_00481 0.26 -1.8 493,889 - MPMX20_00481 0.30 +1.0 493,914 + MPMX20_00481 0.32 -0.1 493,941 - MPMX20_00481 0.35 -1.1 494,021 + MPMX20_00481 0.44 -0.2 494,054 + MPMX20_00481 0.47 +1.0 494,074 - MPMX20_00481 0.50 -0.7 494,097 + MPMX20_00481 0.52 +0.4 494,126 + MPMX20_00481 0.55 -0.3 494,134 - MPMX20_00481 0.56 -0.5 494,151 + MPMX20_00481 0.58 -0.2 494,151 + MPMX20_00481 0.58 +0.6 494,159 - MPMX20_00481 0.59 -0.9 494,159 - MPMX20_00481 0.59 -1.4 494,199 - MPMX20_00481 0.63 +0.6 494,201 - MPMX20_00481 0.63 -0.9 494,291 + MPMX20_00481 0.73 -1.0 494,315 + MPMX20_00481 0.75 -0.4 494,315 + MPMX20_00481 0.75 -0.8 494,315 + MPMX20_00481 0.75 -0.3 494,315 + MPMX20_00481 0.75 -0.7 494,323 - MPMX20_00481 0.76 -0.6 494,340 + MPMX20_00481 0.78 +1.1 494,348 + MPMX20_00481 0.79 -0.0 494,359 + MPMX20_00481 0.80 -0.6 494,402 + MPMX20_00481 0.85 +2.0
Or see this region's nucleotide sequence