Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01558

Experiment: TSB plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01556 and MPMX20_01557 are separated by 10 nucleotidesMPMX20_01557 and MPMX20_01558 are separated by 1 nucleotidesMPMX20_01558 and MPMX20_01559 are separated by 274 nucleotides MPMX20_01556: MPMX20_01556 - Dimethyl sulfoxide reductase DmsA, at 1,633,070 to 1,635,511 _01556 MPMX20_01557: MPMX20_01557 - Anaerobic dimethyl sulfoxide reductase chain B, at 1,635,522 to 1,636,139 _01557 MPMX20_01558: MPMX20_01558 - Anaerobic dimethyl sulfoxide reductase chain C, at 1,636,141 to 1,637,004 _01558 MPMX20_01559: MPMX20_01559 - putative MFS-type transporter YcaD, at 1,637,279 to 1,638,427 _01559 Position (kb) 1636 1637 1638Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1635.177 kb on - strand, within MPMX20_01556at 1635.191 kb on + strand, within MPMX20_01556at 1635.191 kb on + strand, within MPMX20_01556at 1635.199 kb on - strand, within MPMX20_01556at 1635.199 kb on - strand, within MPMX20_01556at 1635.199 kb on - strand, within MPMX20_01556at 1635.219 kb on - strand, within MPMX20_01556at 1635.305 kb on - strandat 1635.330 kb on - strandat 1635.333 kb on + strandat 1635.370 kb on + strandat 1635.405 kb on + strandat 1635.460 kb on + strandat 1635.513 kb on - strandat 1635.513 kb on - strandat 1636.100 kb on + strandat 1636.141 kb on - strandat 1636.202 kb on - strandat 1636.216 kb on - strandat 1636.233 kb on + strand, within MPMX20_01558at 1636.233 kb on + strand, within MPMX20_01558at 1636.241 kb on - strand, within MPMX20_01558at 1636.273 kb on + strand, within MPMX20_01558at 1636.275 kb on - strand, within MPMX20_01558at 1636.283 kb on + strand, within MPMX20_01558at 1636.291 kb on - strand, within MPMX20_01558at 1636.297 kb on - strand, within MPMX20_01558at 1636.327 kb on + strand, within MPMX20_01558at 1636.364 kb on + strand, within MPMX20_01558at 1636.381 kb on - strand, within MPMX20_01558at 1636.384 kb on + strand, within MPMX20_01558at 1636.440 kb on + strand, within MPMX20_01558at 1636.443 kb on - strand, within MPMX20_01558at 1636.477 kb on + strand, within MPMX20_01558at 1636.485 kb on - strand, within MPMX20_01558at 1636.487 kb on + strand, within MPMX20_01558at 1636.495 kb on - strand, within MPMX20_01558at 1636.495 kb on - strand, within MPMX20_01558at 1636.515 kb on - strand, within MPMX20_01558at 1636.516 kb on + strand, within MPMX20_01558at 1636.518 kb on - strand, within MPMX20_01558at 1636.546 kb on + strand, within MPMX20_01558at 1636.567 kb on + strand, within MPMX20_01558at 1636.615 kb on - strand, within MPMX20_01558at 1636.617 kb on + strand, within MPMX20_01558at 1636.625 kb on - strand, within MPMX20_01558at 1636.625 kb on - strand, within MPMX20_01558at 1636.633 kb on + strand, within MPMX20_01558at 1636.788 kb on - strand, within MPMX20_01558at 1636.795 kb on - strand, within MPMX20_01558at 1636.883 kb on - strand, within MPMX20_01558at 1636.884 kb on + strand, within MPMX20_01558at 1636.892 kb on - strand, within MPMX20_01558at 1636.957 kb on - strandat 1636.959 kb on + strandat 1636.959 kb on + strandat 1636.959 kb on + strandat 1636.959 kb on + strandat 1636.959 kb on + strandat 1636.959 kb on + strandat 1636.967 kb on - strandat 1636.967 kb on - strandat 1636.975 kb on - strandat 1636.984 kb on + strandat 1636.984 kb on + strandat 1636.985 kb on + strandat 1636.985 kb on - strandat 1636.990 kb on + strandat 1636.992 kb on - strandat 1636.997 kb on + strandat 1637.004 kb on + strandat 1637.020 kb on + strandat 1637.025 kb on + strandat 1637.027 kb on - strandat 1637.027 kb on - strandat 1637.176 kb on + strandat 1637.184 kb on - strandat 1637.206 kb on - strandat 1637.242 kb on - strandat 1637.313 kb on + strandat 1637.324 kb on + strandat 1637.356 kb on - strandat 1637.356 kb on - strandat 1637.416 kb on - strand, within MPMX20_01559at 1637.440 kb on + strand, within MPMX20_01559at 1637.455 kb on + strand, within MPMX20_01559at 1637.455 kb on + strand, within MPMX20_01559at 1637.463 kb on - strand, within MPMX20_01559at 1637.496 kb on + strand, within MPMX20_01559at 1637.504 kb on - strand, within MPMX20_01559at 1637.532 kb on + strand, within MPMX20_01559at 1637.638 kb on + strand, within MPMX20_01559at 1637.643 kb on - strand, within MPMX20_01559at 1637.676 kb on - strand, within MPMX20_01559at 1637.678 kb on + strand, within MPMX20_01559at 1637.790 kb on - strand, within MPMX20_01559at 1637.822 kb on + strand, within MPMX20_01559at 1637.847 kb on - strand, within MPMX20_01559at 1637.854 kb on + strand, within MPMX20_01559at 1637.862 kb on - strand, within MPMX20_01559at 1637.862 kb on - strand, within MPMX20_01559at 1637.867 kb on - strand, within MPMX20_01559at 1637.886 kb on + strand, within MPMX20_01559at 1637.921 kb on + strand, within MPMX20_01559at 1637.970 kb on - strand, within MPMX20_01559

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,635,177 - MPMX20_01556 0.86 -0.8
1,635,191 + MPMX20_01556 0.87 -0.4
1,635,191 + MPMX20_01556 0.87 -0.5
1,635,199 - MPMX20_01556 0.87 -0.3
1,635,199 - MPMX20_01556 0.87 -1.8
1,635,199 - MPMX20_01556 0.87 -0.0
1,635,219 - MPMX20_01556 0.88 +0.9
1,635,305 - +0.1
1,635,330 - -0.0
1,635,333 + +0.5
1,635,370 + +0.3
1,635,405 + +1.5
1,635,460 + -0.0
1,635,513 - -0.6
1,635,513 - -1.1
1,636,100 + -2.0
1,636,141 - +3.5
1,636,202 - +0.8
1,636,216 - -0.0
1,636,233 + MPMX20_01558 0.11 -0.8
1,636,233 + MPMX20_01558 0.11 +0.2
1,636,241 - MPMX20_01558 0.12 +0.4
1,636,273 + MPMX20_01558 0.15 +0.8
1,636,275 - MPMX20_01558 0.16 -1.1
1,636,283 + MPMX20_01558 0.16 +3.3
1,636,291 - MPMX20_01558 0.17 +1.0
1,636,297 - MPMX20_01558 0.18 -1.4
1,636,327 + MPMX20_01558 0.22 -1.5
1,636,364 + MPMX20_01558 0.26 -1.3
1,636,381 - MPMX20_01558 0.28 +2.1
1,636,384 + MPMX20_01558 0.28 -0.6
1,636,440 + MPMX20_01558 0.35 -1.9
1,636,443 - MPMX20_01558 0.35 -0.2
1,636,477 + MPMX20_01558 0.39 -2.2
1,636,485 - MPMX20_01558 0.40 +1.0
1,636,487 + MPMX20_01558 0.40 +0.8
1,636,495 - MPMX20_01558 0.41 -1.0
1,636,495 - MPMX20_01558 0.41 +0.5
1,636,515 - MPMX20_01558 0.43 -1.8
1,636,516 + MPMX20_01558 0.43 -0.9
1,636,518 - MPMX20_01558 0.44 -1.2
1,636,546 + MPMX20_01558 0.47 +1.5
1,636,567 + MPMX20_01558 0.49 -2.0
1,636,615 - MPMX20_01558 0.55 +1.1
1,636,617 + MPMX20_01558 0.55 +1.7
1,636,625 - MPMX20_01558 0.56 -1.4
1,636,625 - MPMX20_01558 0.56 -0.4
1,636,633 + MPMX20_01558 0.57 +1.5
1,636,788 - MPMX20_01558 0.75 +0.1
1,636,795 - MPMX20_01558 0.76 -0.4
1,636,883 - MPMX20_01558 0.86 +0.4
1,636,884 + MPMX20_01558 0.86 -0.8
1,636,892 - MPMX20_01558 0.87 -3.5
1,636,957 - +1.5
1,636,959 + -0.5
1,636,959 + -0.8
1,636,959 + -0.1
1,636,959 + -1.5
1,636,959 + -0.7
1,636,959 + +1.0
1,636,967 - +1.5
1,636,967 - -1.6
1,636,975 - +0.5
1,636,984 + -0.3
1,636,984 + +1.2
1,636,985 + +1.4
1,636,985 - -0.9
1,636,990 + -0.3
1,636,992 - +1.2
1,636,997 + -0.5
1,637,004 + -2.5
1,637,020 + -0.6
1,637,025 + -0.2
1,637,027 - -1.3
1,637,027 - -1.3
1,637,176 + -0.3
1,637,184 - -1.7
1,637,206 - -0.5
1,637,242 - -0.3
1,637,313 + +0.2
1,637,324 + -1.9
1,637,356 - -1.1
1,637,356 - +2.5
1,637,416 - MPMX20_01559 0.12 -0.1
1,637,440 + MPMX20_01559 0.14 +1.0
1,637,455 + MPMX20_01559 0.15 +0.9
1,637,455 + MPMX20_01559 0.15 -2.5
1,637,463 - MPMX20_01559 0.16 -0.6
1,637,496 + MPMX20_01559 0.19 -1.1
1,637,504 - MPMX20_01559 0.20 -1.1
1,637,532 + MPMX20_01559 0.22 -1.9
1,637,638 + MPMX20_01559 0.31 -0.6
1,637,643 - MPMX20_01559 0.32 -0.7
1,637,676 - MPMX20_01559 0.35 +0.7
1,637,678 + MPMX20_01559 0.35 +0.5
1,637,790 - MPMX20_01559 0.44 +0.2
1,637,822 + MPMX20_01559 0.47 -1.5
1,637,847 - MPMX20_01559 0.49 -0.5
1,637,854 + MPMX20_01559 0.50 +0.5
1,637,862 - MPMX20_01559 0.51 -1.9
1,637,862 - MPMX20_01559 0.51 +1.0
1,637,867 - MPMX20_01559 0.51 +0.1
1,637,886 + MPMX20_01559 0.53 -1.0
1,637,921 + MPMX20_01559 0.56 -2.0
1,637,970 - MPMX20_01559 0.60 -2.3

Or see this region's nucleotide sequence