Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00635

Experiment: M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00634 and MPMX20_00635 are separated by 164 nucleotidesMPMX20_00635 and MPMX20_00636 are separated by 9 nucleotides MPMX20_00634: MPMX20_00634 - 4-hydroxyphenylacetate 3-monooxygenase oxygenase component, at 658,978 to 660,540 _00634 MPMX20_00635: MPMX20_00635 - HTH-type transcriptional activator RhaR, at 660,705 to 661,616 _00635 MPMX20_00636: MPMX20_00636 - Putative tartrate transporter, at 661,626 to 662,978 _00636 Position (kb) 660 661 662Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 659.727 kb on - strand, within MPMX20_00634at 659.775 kb on - strand, within MPMX20_00634at 659.790 kb on - strand, within MPMX20_00634at 659.875 kb on - strand, within MPMX20_00634at 659.910 kb on - strand, within MPMX20_00634at 659.921 kb on - strand, within MPMX20_00634at 659.946 kb on - strand, within MPMX20_00634at 659.946 kb on - strand, within MPMX20_00634at 659.964 kb on + strand, within MPMX20_00634at 660.009 kb on + strand, within MPMX20_00634at 660.032 kb on - strand, within MPMX20_00634at 660.064 kb on - strand, within MPMX20_00634at 660.117 kb on - strand, within MPMX20_00634at 660.164 kb on - strand, within MPMX20_00634at 660.175 kb on + strand, within MPMX20_00634at 660.183 kb on - strand, within MPMX20_00634at 660.245 kb on + strand, within MPMX20_00634at 660.253 kb on - strand, within MPMX20_00634at 660.275 kb on + strand, within MPMX20_00634at 660.329 kb on + strand, within MPMX20_00634at 660.329 kb on + strand, within MPMX20_00634at 660.337 kb on - strand, within MPMX20_00634at 660.341 kb on + strand, within MPMX20_00634at 660.351 kb on + strand, within MPMX20_00634at 660.356 kb on + strand, within MPMX20_00634at 660.356 kb on + strand, within MPMX20_00634at 660.369 kb on - strand, within MPMX20_00634at 660.371 kb on + strand, within MPMX20_00634at 660.371 kb on + strand, within MPMX20_00634at 660.371 kb on + strand, within MPMX20_00634at 660.371 kb on + strand, within MPMX20_00634at 660.371 kb on + strand, within MPMX20_00634at 660.379 kb on - strand, within MPMX20_00634at 660.379 kb on - strand, within MPMX20_00634at 660.379 kb on - strand, within MPMX20_00634at 660.379 kb on - strand, within MPMX20_00634at 660.409 kb on + strandat 660.428 kb on + strandat 660.428 kb on + strandat 660.436 kb on - strandat 660.448 kb on + strandat 660.461 kb on + strandat 660.494 kb on - strandat 660.495 kb on - strandat 660.516 kb on - strandat 660.671 kb on + strandat 660.688 kb on - strandat 660.694 kb on - strandat 660.703 kb on + strandat 660.703 kb on + strandat 660.703 kb on + strandat 660.708 kb on + strandat 660.711 kb on - strandat 660.711 kb on - strandat 660.716 kb on - strandat 660.945 kb on + strand, within MPMX20_00635at 660.973 kb on - strand, within MPMX20_00635at 660.992 kb on - strand, within MPMX20_00635at 660.994 kb on + strand, within MPMX20_00635at 660.994 kb on + strand, within MPMX20_00635at 661.002 kb on - strand, within MPMX20_00635at 661.007 kb on - strand, within MPMX20_00635at 661.018 kb on + strand, within MPMX20_00635at 661.028 kb on + strand, within MPMX20_00635at 661.036 kb on - strand, within MPMX20_00635at 661.118 kb on - strand, within MPMX20_00635at 661.118 kb on - strand, within MPMX20_00635at 661.197 kb on - strand, within MPMX20_00635at 661.202 kb on - strand, within MPMX20_00635at 661.264 kb on - strand, within MPMX20_00635at 661.264 kb on - strand, within MPMX20_00635at 661.287 kb on - strand, within MPMX20_00635at 661.287 kb on - strand, within MPMX20_00635at 661.287 kb on - strand, within MPMX20_00635at 661.314 kb on + strand, within MPMX20_00635at 661.411 kb on + strand, within MPMX20_00635at 661.414 kb on - strand, within MPMX20_00635at 661.419 kb on - strand, within MPMX20_00635at 661.423 kb on + strand, within MPMX20_00635at 661.612 kb on - strandat 661.645 kb on + strandat 661.653 kb on - strandat 661.653 kb on - strandat 661.688 kb on + strandat 661.807 kb on - strand, within MPMX20_00636at 661.835 kb on - strand, within MPMX20_00636at 661.882 kb on + strand, within MPMX20_00636at 661.943 kb on + strand, within MPMX20_00636at 661.951 kb on - strand, within MPMX20_00636at 661.951 kb on - strand, within MPMX20_00636at 661.961 kb on - strand, within MPMX20_00636at 661.968 kb on + strand, within MPMX20_00636at 662.027 kb on + strand, within MPMX20_00636at 662.027 kb on + strand, within MPMX20_00636at 662.056 kb on - strand, within MPMX20_00636at 662.062 kb on + strand, within MPMX20_00636at 662.074 kb on + strand, within MPMX20_00636at 662.074 kb on + strand, within MPMX20_00636at 662.082 kb on + strand, within MPMX20_00636at 662.181 kb on - strand, within MPMX20_00636at 662.206 kb on + strand, within MPMX20_00636at 662.206 kb on + strand, within MPMX20_00636at 662.206 kb on + strand, within MPMX20_00636at 662.206 kb on + strand, within MPMX20_00636at 662.206 kb on + strand, within MPMX20_00636at 662.206 kb on + strand, within MPMX20_00636at 662.206 kb on + strand, within MPMX20_00636at 662.211 kb on + strand, within MPMX20_00636at 662.214 kb on - strand, within MPMX20_00636at 662.214 kb on - strand, within MPMX20_00636at 662.219 kb on - strand, within MPMX20_00636at 662.225 kb on + strand, within MPMX20_00636at 662.234 kb on - strand, within MPMX20_00636at 662.234 kb on - strand, within MPMX20_00636at 662.234 kb on - strand, within MPMX20_00636at 662.265 kb on - strand, within MPMX20_00636at 662.348 kb on - strand, within MPMX20_00636at 662.414 kb on + strand, within MPMX20_00636at 662.465 kb on - strand, within MPMX20_00636at 662.489 kb on + strand, within MPMX20_00636at 662.489 kb on + strand, within MPMX20_00636

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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659,727 - MPMX20_00634 0.48 +0.6
659,775 - MPMX20_00634 0.51 +1.1
659,790 - MPMX20_00634 0.52 +5.1
659,875 - MPMX20_00634 0.57 -1.1
659,910 - MPMX20_00634 0.60 -0.8
659,921 - MPMX20_00634 0.60 +3.1
659,946 - MPMX20_00634 0.62 -0.3
659,946 - MPMX20_00634 0.62 -1.9
659,964 + MPMX20_00634 0.63 +2.7
660,009 + MPMX20_00634 0.66 +0.3
660,032 - MPMX20_00634 0.67 -0.6
660,064 - MPMX20_00634 0.69 +0.6
660,117 - MPMX20_00634 0.73 +1.5
660,164 - MPMX20_00634 0.76 +0.6
660,175 + MPMX20_00634 0.77 -1.5
660,183 - MPMX20_00634 0.77 +0.2
660,245 + MPMX20_00634 0.81 +0.8
660,253 - MPMX20_00634 0.82 +0.3
660,275 + MPMX20_00634 0.83 +1.1
660,329 + MPMX20_00634 0.86 +0.1
660,329 + MPMX20_00634 0.86 +1.1
660,337 - MPMX20_00634 0.87 -0.9
660,341 + MPMX20_00634 0.87 +0.2
660,351 + MPMX20_00634 0.88 -0.8
660,356 + MPMX20_00634 0.88 +0.5
660,356 + MPMX20_00634 0.88 -0.9
660,369 - MPMX20_00634 0.89 -0.7
660,371 + MPMX20_00634 0.89 -0.8
660,371 + MPMX20_00634 0.89 +0.5
660,371 + MPMX20_00634 0.89 +0.4
660,371 + MPMX20_00634 0.89 +1.2
660,371 + MPMX20_00634 0.89 -1.6
660,379 - MPMX20_00634 0.90 -1.6
660,379 - MPMX20_00634 0.90 -0.6
660,379 - MPMX20_00634 0.90 +6.3
660,379 - MPMX20_00634 0.90 -0.9
660,409 + +1.9
660,428 + -1.7
660,428 + -0.5
660,436 - -2.8
660,448 + -0.9
660,461 + +0.6
660,494 - +1.1
660,495 - -0.9
660,516 - -1.7
660,671 + -0.5
660,688 - +0.6
660,694 - +0.4
660,703 + +0.2
660,703 + -1.4
660,703 + -0.9
660,708 + -0.1
660,711 - -0.5
660,711 - -2.6
660,716 - -0.6
660,945 + MPMX20_00635 0.26 -0.0
660,973 - MPMX20_00635 0.29 +1.9
660,992 - MPMX20_00635 0.31 +0.7
660,994 + MPMX20_00635 0.32 -0.6
660,994 + MPMX20_00635 0.32 +1.6
661,002 - MPMX20_00635 0.33 +0.5
661,007 - MPMX20_00635 0.33 +0.6
661,018 + MPMX20_00635 0.34 -0.2
661,028 + MPMX20_00635 0.35 -0.2
661,036 - MPMX20_00635 0.36 -1.8
661,118 - MPMX20_00635 0.45 -0.5
661,118 - MPMX20_00635 0.45 -1.3
661,197 - MPMX20_00635 0.54 -0.4
661,202 - MPMX20_00635 0.54 -0.6
661,264 - MPMX20_00635 0.61 -1.4
661,264 - MPMX20_00635 0.61 -0.4
661,287 - MPMX20_00635 0.64 +0.6
661,287 - MPMX20_00635 0.64 -1.0
661,287 - MPMX20_00635 0.64 -0.7
661,314 + MPMX20_00635 0.67 -0.7
661,411 + MPMX20_00635 0.77 -0.4
661,414 - MPMX20_00635 0.78 -1.2
661,419 - MPMX20_00635 0.78 +0.2
661,423 + MPMX20_00635 0.79 -2.0
661,612 - -0.2
661,645 + -0.4
661,653 - +1.1
661,653 - -1.9
661,688 + -1.1
661,807 - MPMX20_00636 0.13 +2.6
661,835 - MPMX20_00636 0.15 +0.0
661,882 + MPMX20_00636 0.19 +0.6
661,943 + MPMX20_00636 0.23 -2.0
661,951 - MPMX20_00636 0.24 +0.5
661,951 - MPMX20_00636 0.24 +1.3
661,961 - MPMX20_00636 0.25 +1.0
661,968 + MPMX20_00636 0.25 +0.6
662,027 + MPMX20_00636 0.30 +3.6
662,027 + MPMX20_00636 0.30 +0.7
662,056 - MPMX20_00636 0.32 -1.5
662,062 + MPMX20_00636 0.32 -1.1
662,074 + MPMX20_00636 0.33 +1.2
662,074 + MPMX20_00636 0.33 -0.4
662,082 + MPMX20_00636 0.34 +0.5
662,181 - MPMX20_00636 0.41 +1.4
662,206 + MPMX20_00636 0.43 -0.6
662,206 + MPMX20_00636 0.43 -0.2
662,206 + MPMX20_00636 0.43 +1.6
662,206 + MPMX20_00636 0.43 +1.0
662,206 + MPMX20_00636 0.43 -1.7
662,206 + MPMX20_00636 0.43 +0.6
662,206 + MPMX20_00636 0.43 -0.2
662,211 + MPMX20_00636 0.43 -1.2
662,214 - MPMX20_00636 0.43 +0.0
662,214 - MPMX20_00636 0.43 -0.2
662,219 - MPMX20_00636 0.44 -2.3
662,225 + MPMX20_00636 0.44 +1.2
662,234 - MPMX20_00636 0.45 +0.1
662,234 - MPMX20_00636 0.45 -0.7
662,234 - MPMX20_00636 0.45 +0.5
662,265 - MPMX20_00636 0.47 -0.9
662,348 - MPMX20_00636 0.53 -0.8
662,414 + MPMX20_00636 0.58 -1.2
662,465 - MPMX20_00636 0.62 -0.2
662,489 + MPMX20_00636 0.64 +0.3
662,489 + MPMX20_00636 0.64 +0.1

Or see this region's nucleotide sequence