Experiment: 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02149 and MPMX20_02150 overlap by 11 nucleotides MPMX20_02150 and MPMX20_02151 overlap by 1 nucleotides
MPMX20_02149: MPMX20_02149 - 3-hydroxyadipyl-CoA dehydrogenase, at 2,241,010 to 2,242,437
_02149
MPMX20_02150: MPMX20_02150 - Acyl-coenzyme A thioesterase PaaI, at 2,242,427 to 2,242,849
_02150
MPMX20_02151: MPMX20_02151 - 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase, at 2,242,849 to 2,244,054
_02151
Position (kb)
2242
2243 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2241.565 kb on + strand, within MPMX20_02149 at 2241.566 kb on + strand, within MPMX20_02149 at 2241.574 kb on - strand, within MPMX20_02149 at 2241.605 kb on + strand, within MPMX20_02149 at 2241.631 kb on - strand, within MPMX20_02149 at 2241.706 kb on - strand, within MPMX20_02149 at 2241.754 kb on - strand, within MPMX20_02149 at 2241.869 kb on + strand, within MPMX20_02149 at 2241.919 kb on - strand, within MPMX20_02149 at 2242.087 kb on - strand, within MPMX20_02149 at 2242.257 kb on - strand, within MPMX20_02149 at 2242.307 kb on - strand at 2242.367 kb on - strand at 2242.383 kb on + strand at 2242.388 kb on + strand at 2242.419 kb on + strand at 2242.419 kb on - strand at 2242.419 kb on - strand at 2242.453 kb on - strand at 2242.634 kb on + strand, within MPMX20_02150 at 2242.635 kb on + strand, within MPMX20_02150 at 2242.655 kb on + strand, within MPMX20_02150 at 2242.723 kb on + strand, within MPMX20_02150 at 2242.731 kb on - strand, within MPMX20_02150 at 2242.759 kb on - strand, within MPMX20_02150 at 2242.838 kb on + strand at 2242.914 kb on - strand at 2242.937 kb on + strand at 2242.950 kb on - strand at 2243.087 kb on - strand, within MPMX20_02151 at 2243.097 kb on - strand, within MPMX20_02151 at 2243.120 kb on + strand, within MPMX20_02151 at 2243.128 kb on - strand, within MPMX20_02151 at 2243.154 kb on + strand, within MPMX20_02151 at 2243.229 kb on + strand, within MPMX20_02151 at 2243.237 kb on - strand, within MPMX20_02151 at 2243.286 kb on - strand, within MPMX20_02151 at 2243.423 kb on + strand, within MPMX20_02151 at 2243.526 kb on - strand, within MPMX20_02151 at 2243.548 kb on - strand, within MPMX20_02151 at 2243.606 kb on + strand, within MPMX20_02151 at 2243.606 kb on + strand, within MPMX20_02151 at 2243.614 kb on - strand, within MPMX20_02151 at 2243.666 kb on + strand, within MPMX20_02151 at 2243.672 kb on + strand, within MPMX20_02151 at 2243.680 kb on - strand, within MPMX20_02151 at 2243.733 kb on - strand, within MPMX20_02151 at 2243.743 kb on - strand, within MPMX20_02151 at 2243.743 kb on - strand, within MPMX20_02151 at 2243.804 kb on + strand, within MPMX20_02151
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,241,565 + MPMX20_02149 0.39 -2.0 2,241,566 + MPMX20_02149 0.39 -0.9 2,241,574 - MPMX20_02149 0.39 -1.7 2,241,605 + MPMX20_02149 0.42 -3.9 2,241,631 - MPMX20_02149 0.43 -2.2 2,241,706 - MPMX20_02149 0.49 -0.7 2,241,754 - MPMX20_02149 0.52 -1.9 2,241,869 + MPMX20_02149 0.60 -1.7 2,241,919 - MPMX20_02149 0.64 -1.9 2,242,087 - MPMX20_02149 0.75 +0.3 2,242,257 - MPMX20_02149 0.87 -1.1 2,242,307 - -2.6 2,242,367 - -2.2 2,242,383 + -2.0 2,242,388 + -0.4 2,242,419 + -0.5 2,242,419 - -0.0 2,242,419 - -2.0 2,242,453 - -1.3 2,242,634 + MPMX20_02150 0.49 -0.4 2,242,635 + MPMX20_02150 0.49 -1.0 2,242,655 + MPMX20_02150 0.54 -1.2 2,242,723 + MPMX20_02150 0.70 -1.0 2,242,731 - MPMX20_02150 0.72 -0.2 2,242,759 - MPMX20_02150 0.78 -0.2 2,242,838 + -1.8 2,242,914 - -0.2 2,242,937 + -0.2 2,242,950 - -0.5 2,243,087 - MPMX20_02151 0.20 -0.5 2,243,097 - MPMX20_02151 0.21 -0.4 2,243,120 + MPMX20_02151 0.22 -1.7 2,243,128 - MPMX20_02151 0.23 -1.3 2,243,154 + MPMX20_02151 0.25 -0.0 2,243,229 + MPMX20_02151 0.32 -2.3 2,243,237 - MPMX20_02151 0.32 -0.7 2,243,286 - MPMX20_02151 0.36 -0.0 2,243,423 + MPMX20_02151 0.48 +0.5 2,243,526 - MPMX20_02151 0.56 +0.1 2,243,548 - MPMX20_02151 0.58 +2.1 2,243,606 + MPMX20_02151 0.63 -1.7 2,243,606 + MPMX20_02151 0.63 -0.2 2,243,614 - MPMX20_02151 0.63 -0.8 2,243,666 + MPMX20_02151 0.68 +0.5 2,243,672 + MPMX20_02151 0.68 -0.7 2,243,680 - MPMX20_02151 0.69 -2.0 2,243,733 - MPMX20_02151 0.73 -1.0 2,243,743 - MPMX20_02151 0.74 -1.7 2,243,743 - MPMX20_02151 0.74 -0.0 2,243,804 + MPMX20_02151 0.79 -0.3
Or see this region's nucleotide sequence