Experiment: 1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00892 and MPMX20_00893 are separated by 104 nucleotides MPMX20_00893 and MPMX20_00894 are separated by 112 nucleotides
MPMX20_00892: MPMX20_00892 - HTH-type transcriptional regulator DmlR, at 940,503 to 941,408
_00892
MPMX20_00893: MPMX20_00893 - Inner membrane transport protein YdhP, at 941,513 to 942,688
_00893
MPMX20_00894: MPMX20_00894 - hypothetical protein, at 942,801 to 943,625
_00894
Position (kb) 941
942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 940.582 kb on - strand at 940.598 kb on - strand, within MPMX20_00892 at 940.622 kb on - strand, within MPMX20_00892 at 940.686 kb on - strand, within MPMX20_00892 at 940.725 kb on - strand, within MPMX20_00892 at 940.725 kb on - strand, within MPMX20_00892 at 940.746 kb on + strand, within MPMX20_00892 at 940.760 kb on - strand, within MPMX20_00892 at 940.801 kb on + strand, within MPMX20_00892 at 940.809 kb on - strand, within MPMX20_00892 at 940.809 kb on - strand, within MPMX20_00892 at 940.833 kb on + strand, within MPMX20_00892 at 940.841 kb on - strand, within MPMX20_00892 at 940.845 kb on - strand, within MPMX20_00892 at 940.883 kb on + strand, within MPMX20_00892 at 940.893 kb on + strand, within MPMX20_00892 at 941.045 kb on + strand, within MPMX20_00892 at 941.068 kb on + strand, within MPMX20_00892 at 941.076 kb on - strand, within MPMX20_00892 at 941.149 kb on - strand, within MPMX20_00892 at 941.264 kb on + strand, within MPMX20_00892 at 941.408 kb on + strand at 941.467 kb on + strand at 941.475 kb on - strand at 941.577 kb on + strand at 941.588 kb on - strand at 941.590 kb on - strand at 941.623 kb on + strand at 941.626 kb on - strand at 941.631 kb on - strand, within MPMX20_00893 at 941.631 kb on - strand, within MPMX20_00893 at 941.676 kb on + strand, within MPMX20_00893 at 941.746 kb on - strand, within MPMX20_00893 at 941.759 kb on + strand, within MPMX20_00893 at 941.764 kb on + strand, within MPMX20_00893 at 941.779 kb on + strand, within MPMX20_00893 at 941.779 kb on + strand, within MPMX20_00893 at 941.779 kb on + strand, within MPMX20_00893 at 941.782 kb on - strand, within MPMX20_00893 at 941.792 kb on - strand, within MPMX20_00893 at 941.792 kb on - strand, within MPMX20_00893 at 941.812 kb on + strand, within MPMX20_00893 at 941.821 kb on + strand, within MPMX20_00893 at 941.841 kb on - strand, within MPMX20_00893 at 941.863 kb on - strand, within MPMX20_00893 at 941.877 kb on - strand, within MPMX20_00893 at 941.963 kb on + strand, within MPMX20_00893 at 942.038 kb on + strand, within MPMX20_00893 at 942.064 kb on + strand, within MPMX20_00893 at 942.072 kb on + strand, within MPMX20_00893 at 942.091 kb on + strand, within MPMX20_00893 at 942.099 kb on - strand, within MPMX20_00893 at 942.099 kb on - strand, within MPMX20_00893 at 942.106 kb on - strand, within MPMX20_00893 at 942.107 kb on + strand, within MPMX20_00893 at 942.147 kb on + strand, within MPMX20_00893 at 942.148 kb on - strand, within MPMX20_00893 at 942.251 kb on - strand, within MPMX20_00893 at 942.303 kb on + strand, within MPMX20_00893 at 942.322 kb on - strand, within MPMX20_00893 at 942.335 kb on + strand, within MPMX20_00893 at 942.394 kb on + strand, within MPMX20_00893 at 942.407 kb on - strand, within MPMX20_00893 at 942.435 kb on + strand, within MPMX20_00893 at 942.442 kb on - strand, within MPMX20_00893 at 942.456 kb on - strand, within MPMX20_00893 at 942.552 kb on - strand, within MPMX20_00893 at 942.589 kb on - strand at 942.696 kb on - strand at 942.769 kb on + strand at 942.769 kb on + strand at 942.777 kb on - strand at 942.804 kb on - strand at 942.856 kb on - strand at 942.886 kb on - strand, within MPMX20_00894 at 942.933 kb on + strand, within MPMX20_00894 at 942.933 kb on + strand, within MPMX20_00894 at 942.933 kb on + strand, within MPMX20_00894 at 942.933 kb on + strand, within MPMX20_00894 at 942.933 kb on + strand, within MPMX20_00894 at 942.933 kb on + strand, within MPMX20_00894 at 942.933 kb on + strand, within MPMX20_00894 at 942.933 kb on + strand, within MPMX20_00894 at 942.933 kb on + strand, within MPMX20_00894 at 942.933 kb on + strand, within MPMX20_00894 at 942.933 kb on + strand, within MPMX20_00894 at 942.933 kb on + strand, within MPMX20_00894 at 942.933 kb on + strand, within MPMX20_00894 at 942.941 kb on - strand, within MPMX20_00894 at 942.941 kb on - strand, within MPMX20_00894 at 942.941 kb on - strand, within MPMX20_00894 at 942.941 kb on - strand, within MPMX20_00894 at 942.941 kb on - strand, within MPMX20_00894 at 942.941 kb on - strand, within MPMX20_00894 at 942.941 kb on - strand, within MPMX20_00894 at 942.941 kb on - strand, within MPMX20_00894 at 942.941 kb on - strand, within MPMX20_00894 at 942.941 kb on - strand, within MPMX20_00894 at 942.941 kb on - strand, within MPMX20_00894 at 942.941 kb on - strand, within MPMX20_00894 at 942.974 kb on - strand, within MPMX20_00894 at 943.033 kb on + strand, within MPMX20_00894 at 943.066 kb on + strand, within MPMX20_00894 at 943.074 kb on - strand, within MPMX20_00894 at 943.076 kb on + strand, within MPMX20_00894 at 943.081 kb on + strand, within MPMX20_00894 at 943.089 kb on - strand, within MPMX20_00894 at 943.154 kb on + strand, within MPMX20_00894 at 943.238 kb on + strand, within MPMX20_00894 at 943.308 kb on - strand, within MPMX20_00894 at 943.308 kb on - strand, within MPMX20_00894 at 943.320 kb on - strand, within MPMX20_00894 at 943.325 kb on - strand, within MPMX20_00894 at 943.325 kb on - strand, within MPMX20_00894 at 943.401 kb on + strand, within MPMX20_00894 at 943.549 kb on + strand at 943.607 kb on + strand at 943.647 kb on + strand at 943.649 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Bacillus pumilus TBS_104 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 940,582 - -0.7 940,598 - MPMX20_00892 0.10 -0.3 940,622 - MPMX20_00892 0.13 -0.8 940,686 - MPMX20_00892 0.20 +0.6 940,725 - MPMX20_00892 0.25 -0.6 940,725 - MPMX20_00892 0.25 -0.4 940,746 + MPMX20_00892 0.27 -0.5 940,760 - MPMX20_00892 0.28 +0.3 940,801 + MPMX20_00892 0.33 +1.6 940,809 - MPMX20_00892 0.34 +0.9 940,809 - MPMX20_00892 0.34 +0.4 940,833 + MPMX20_00892 0.36 -1.2 940,841 - MPMX20_00892 0.37 -1.7 940,845 - MPMX20_00892 0.38 -0.1 940,883 + MPMX20_00892 0.42 +1.6 940,893 + MPMX20_00892 0.43 +0.4 941,045 + MPMX20_00892 0.60 -1.1 941,068 + MPMX20_00892 0.62 +0.6 941,076 - MPMX20_00892 0.63 -0.3 941,149 - MPMX20_00892 0.71 -1.0 941,264 + MPMX20_00892 0.84 +0.9 941,408 + +1.3 941,467 + +0.1 941,475 - -1.3 941,577 + +0.3 941,588 - +0.3 941,590 - +0.5 941,623 + -0.9 941,626 - -1.0 941,631 - MPMX20_00893 0.10 -0.2 941,631 - MPMX20_00893 0.10 -0.9 941,676 + MPMX20_00893 0.14 -0.6 941,746 - MPMX20_00893 0.20 -0.2 941,759 + MPMX20_00893 0.21 +0.3 941,764 + MPMX20_00893 0.21 +0.2 941,779 + MPMX20_00893 0.23 -0.1 941,779 + MPMX20_00893 0.23 +0.2 941,779 + MPMX20_00893 0.23 +1.3 941,782 - MPMX20_00893 0.23 +0.9 941,792 - MPMX20_00893 0.24 +1.6 941,792 - MPMX20_00893 0.24 -2.1 941,812 + MPMX20_00893 0.25 +0.2 941,821 + MPMX20_00893 0.26 -2.0 941,841 - MPMX20_00893 0.28 +1.3 941,863 - MPMX20_00893 0.30 +7.1 941,877 - MPMX20_00893 0.31 +0.1 941,963 + MPMX20_00893 0.38 +0.1 942,038 + MPMX20_00893 0.45 -1.8 942,064 + MPMX20_00893 0.47 -2.6 942,072 + MPMX20_00893 0.48 -0.9 942,091 + MPMX20_00893 0.49 -1.0 942,099 - MPMX20_00893 0.50 +0.4 942,099 - MPMX20_00893 0.50 -1.7 942,106 - MPMX20_00893 0.50 +0.6 942,107 + MPMX20_00893 0.51 +0.4 942,147 + MPMX20_00893 0.54 -0.4 942,148 - MPMX20_00893 0.54 +0.8 942,251 - MPMX20_00893 0.63 +0.3 942,303 + MPMX20_00893 0.67 +0.2 942,322 - MPMX20_00893 0.69 +0.9 942,335 + MPMX20_00893 0.70 -0.7 942,394 + MPMX20_00893 0.75 -2.6 942,407 - MPMX20_00893 0.76 -1.2 942,435 + MPMX20_00893 0.78 +0.3 942,442 - MPMX20_00893 0.79 +0.3 942,456 - MPMX20_00893 0.80 -2.2 942,552 - MPMX20_00893 0.88 -0.5 942,589 - -1.5 942,696 - +0.1 942,769 + +0.1 942,769 + +0.0 942,777 - -0.3 942,804 - +0.9 942,856 - -0.1 942,886 - MPMX20_00894 0.10 -0.5 942,933 + MPMX20_00894 0.16 -1.5 942,933 + MPMX20_00894 0.16 -2.0 942,933 + MPMX20_00894 0.16 -0.5 942,933 + MPMX20_00894 0.16 +0.3 942,933 + MPMX20_00894 0.16 +0.1 942,933 + MPMX20_00894 0.16 -0.1 942,933 + MPMX20_00894 0.16 +0.6 942,933 + MPMX20_00894 0.16 -0.2 942,933 + MPMX20_00894 0.16 -2.2 942,933 + MPMX20_00894 0.16 -1.1 942,933 + MPMX20_00894 0.16 +0.6 942,933 + MPMX20_00894 0.16 -1.2 942,933 + MPMX20_00894 0.16 -0.5 942,941 - MPMX20_00894 0.17 -0.9 942,941 - MPMX20_00894 0.17 +1.9 942,941 - MPMX20_00894 0.17 +1.1 942,941 - MPMX20_00894 0.17 +0.9 942,941 - MPMX20_00894 0.17 -0.8 942,941 - MPMX20_00894 0.17 +0.8 942,941 - MPMX20_00894 0.17 -2.4 942,941 - MPMX20_00894 0.17 -0.3 942,941 - MPMX20_00894 0.17 +1.0 942,941 - MPMX20_00894 0.17 -1.4 942,941 - MPMX20_00894 0.17 +0.0 942,941 - MPMX20_00894 0.17 +0.3 942,974 - MPMX20_00894 0.21 -1.0 943,033 + MPMX20_00894 0.28 -2.9 943,066 + MPMX20_00894 0.32 -1.2 943,074 - MPMX20_00894 0.33 -0.4 943,076 + MPMX20_00894 0.33 -0.6 943,081 + MPMX20_00894 0.34 +0.1 943,089 - MPMX20_00894 0.35 -0.3 943,154 + MPMX20_00894 0.43 +1.3 943,238 + MPMX20_00894 0.53 -1.0 943,308 - MPMX20_00894 0.61 +0.3 943,308 - MPMX20_00894 0.61 -0.9 943,320 - MPMX20_00894 0.63 -0.0 943,325 - MPMX20_00894 0.64 -1.0 943,325 - MPMX20_00894 0.64 -1.9 943,401 + MPMX20_00894 0.73 +0.2 943,549 + -0.4 943,607 + +0.8 943,647 + -0.5 943,649 - -0.9
Or see this region's nucleotide sequence