Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01783 and MPMX20_01784 are separated by 42 nucleotides MPMX20_01784 and MPMX20_01785 are separated by 1 nucleotides MPMX20_01785 and MPMX20_01786 are separated by 10 nucleotides MPMX20_01786 and MPMX20_01787 overlap by 20 nucleotides MPMX20_01787 and MPMX20_01788 are separated by 11 nucleotides
MPMX20_01783: MPMX20_01783 - hypothetical protein, at 1,876,781 to 1,876,930
_01783
MPMX20_01784: MPMX20_01784 - Purine nucleoside phosphoramidase, at 1,876,973 to 1,877,332
_01784
MPMX20_01785: MPMX20_01785 - hypothetical protein, at 1,877,334 to 1,877,708
_01785
MPMX20_01786: MPMX20_01786 - Penicillin-binding protein activator LpoB, at 1,877,719 to 1,878,366
_01786
MPMX20_01787: MPMX20_01787 - Thiamine kinase, at 1,878,347 to 1,879,171
_01787
MPMX20_01788: MPMX20_01788 - Beta-hexosaminidase, at 1,879,183 to 1,880,208
_01788
Position (kb)
1877
1878
1879 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4
5
6
7 at 1876.808 kb on + strand, within MPMX20_01783 at 1876.815 kb on - strand, within MPMX20_01783 at 1876.815 kb on - strand, within MPMX20_01783 at 1876.823 kb on - strand, within MPMX20_01783 at 1876.824 kb on - strand, within MPMX20_01783 at 1876.824 kb on - strand, within MPMX20_01783 at 1876.824 kb on - strand, within MPMX20_01783 at 1876.826 kb on - strand, within MPMX20_01783 at 1876.833 kb on - strand, within MPMX20_01783 at 1876.873 kb on + strand, within MPMX20_01783 at 1876.881 kb on - strand, within MPMX20_01783 at 1876.881 kb on - strand, within MPMX20_01783 at 1876.900 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.908 kb on + strand, within MPMX20_01783 at 1876.910 kb on + strand, within MPMX20_01783 at 1876.910 kb on + strand, within MPMX20_01783 at 1876.910 kb on + strand, within MPMX20_01783 at 1876.910 kb on + strand, within MPMX20_01783 at 1876.910 kb on + strand, within MPMX20_01783 at 1876.910 kb on + strand, within MPMX20_01783 at 1876.910 kb on + strand, within MPMX20_01783 at 1876.910 kb on + strand, within MPMX20_01783 at 1876.916 kb on - strand at 1876.916 kb on - strand at 1876.916 kb on - strand at 1876.916 kb on - strand at 1876.916 kb on - strand at 1876.918 kb on - strand at 1876.918 kb on - strand at 1876.939 kb on + strand at 1876.943 kb on + strand at 1877.153 kb on + strand, within MPMX20_01784 at 1877.153 kb on + strand, within MPMX20_01784 at 1877.160 kb on + strand, within MPMX20_01784 at 1877.161 kb on - strand, within MPMX20_01784 at 1877.161 kb on - strand, within MPMX20_01784 at 1877.161 kb on - strand, within MPMX20_01784 at 1877.161 kb on - strand, within MPMX20_01784 at 1877.173 kb on - strand, within MPMX20_01784 at 1877.223 kb on - strand, within MPMX20_01784 at 1877.245 kb on + strand, within MPMX20_01784 at 1877.335 kb on + strand at 1877.350 kb on + strand at 1877.355 kb on - strand at 1877.426 kb on - strand, within MPMX20_01785 at 1877.430 kb on + strand, within MPMX20_01785 at 1877.440 kb on + strand, within MPMX20_01785 at 1877.495 kb on + strand, within MPMX20_01785 at 1877.647 kb on + strand, within MPMX20_01785 at 1877.649 kb on + strand, within MPMX20_01785 at 1877.676 kb on - strand at 1877.679 kb on + strand at 1877.689 kb on + strand at 1877.698 kb on - strand at 1877.710 kb on + strand at 1877.711 kb on + strand at 1877.718 kb on - strand at 1877.766 kb on + strand at 1877.774 kb on - strand at 1877.780 kb on + strand at 1877.797 kb on - strand, within MPMX20_01786 at 1877.797 kb on - strand, within MPMX20_01786 at 1877.807 kb on - strand, within MPMX20_01786 at 1877.977 kb on - strand, within MPMX20_01786 at 1878.003 kb on + strand, within MPMX20_01786 at 1878.003 kb on + strand, within MPMX20_01786 at 1878.011 kb on - strand, within MPMX20_01786 at 1878.026 kb on + strand, within MPMX20_01786 at 1878.026 kb on + strand, within MPMX20_01786 at 1878.106 kb on + strand, within MPMX20_01786 at 1878.133 kb on - strand, within MPMX20_01786 at 1878.143 kb on - strand, within MPMX20_01786 at 1878.194 kb on + strand, within MPMX20_01786 at 1878.194 kb on + strand, within MPMX20_01786 at 1878.197 kb on - strand, within MPMX20_01786 at 1878.252 kb on + strand, within MPMX20_01786 at 1878.312 kb on + strand at 1878.355 kb on + strand at 1878.427 kb on + strand at 1878.488 kb on - strand, within MPMX20_01787 at 1878.488 kb on - strand, within MPMX20_01787 at 1878.506 kb on + strand, within MPMX20_01787 at 1878.506 kb on + strand, within MPMX20_01787 at 1878.506 kb on + strand, within MPMX20_01787 at 1878.608 kb on + strand, within MPMX20_01787 at 1878.616 kb on + strand, within MPMX20_01787 at 1878.616 kb on - strand, within MPMX20_01787 at 1878.616 kb on - strand, within MPMX20_01787 at 1878.661 kb on + strand, within MPMX20_01787 at 1878.681 kb on - strand, within MPMX20_01787 at 1878.698 kb on + strand, within MPMX20_01787 at 1878.719 kb on - strand, within MPMX20_01787 at 1878.765 kb on + strand, within MPMX20_01787 at 1878.765 kb on + strand, within MPMX20_01787 at 1878.780 kb on + strand, within MPMX20_01787 at 1878.780 kb on + strand, within MPMX20_01787 at 1878.827 kb on + strand, within MPMX20_01787 at 1878.844 kb on + strand, within MPMX20_01787 at 1878.852 kb on - strand, within MPMX20_01787 at 1878.896 kb on - strand, within MPMX20_01787 at 1878.932 kb on + strand, within MPMX20_01787 at 1878.961 kb on + strand, within MPMX20_01787 at 1879.140 kb on - strand at 1879.174 kb on - strand at 1879.174 kb on - strand at 1879.176 kb on + strand at 1879.180 kb on + strand at 1879.211 kb on + strand at 1879.219 kb on - strand at 1879.231 kb on - strand at 1879.233 kb on + strand at 1879.320 kb on - strand, within MPMX20_01788 at 1879.326 kb on + strand, within MPMX20_01788
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_103 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,876,808 + MPMX20_01783 0.18 -3.1 1,876,815 - MPMX20_01783 0.23 +1.6 1,876,815 - MPMX20_01783 0.23 -1.8 1,876,823 - MPMX20_01783 0.28 +0.2 1,876,824 - MPMX20_01783 0.29 -0.6 1,876,824 - MPMX20_01783 0.29 +1.1 1,876,824 - MPMX20_01783 0.29 +2.0 1,876,826 - MPMX20_01783 0.30 -0.8 1,876,833 - MPMX20_01783 0.35 +1.4 1,876,873 + MPMX20_01783 0.61 +1.0 1,876,881 - MPMX20_01783 0.67 -1.6 1,876,881 - MPMX20_01783 0.67 -0.5 1,876,900 + MPMX20_01783 0.79 -2.7 1,876,908 + MPMX20_01783 0.85 +0.5 1,876,908 + MPMX20_01783 0.85 -1.2 1,876,908 + MPMX20_01783 0.85 -2.5 1,876,908 + MPMX20_01783 0.85 +1.9 1,876,908 + MPMX20_01783 0.85 -4.0 1,876,908 + MPMX20_01783 0.85 +2.5 1,876,908 + MPMX20_01783 0.85 +1.5 1,876,908 + MPMX20_01783 0.85 +0.2 1,876,908 + MPMX20_01783 0.85 +1.2 1,876,908 + MPMX20_01783 0.85 -0.1 1,876,908 + MPMX20_01783 0.85 -1.5 1,876,908 + MPMX20_01783 0.85 -2.5 1,876,908 + MPMX20_01783 0.85 +0.6 1,876,908 + MPMX20_01783 0.85 -1.3 1,876,908 + MPMX20_01783 0.85 -3.9 1,876,908 + MPMX20_01783 0.85 -1.4 1,876,908 + MPMX20_01783 0.85 +0.8 1,876,908 + MPMX20_01783 0.85 -0.6 1,876,908 + MPMX20_01783 0.85 -0.5 1,876,908 + MPMX20_01783 0.85 -0.7 1,876,908 + MPMX20_01783 0.85 +0.7 1,876,908 + MPMX20_01783 0.85 +1.6 1,876,908 + MPMX20_01783 0.85 +0.1 1,876,908 + MPMX20_01783 0.85 -0.9 1,876,908 + MPMX20_01783 0.85 -0.2 1,876,908 + MPMX20_01783 0.85 +0.3 1,876,908 + MPMX20_01783 0.85 +0.3 1,876,908 + MPMX20_01783 0.85 +0.3 1,876,908 + MPMX20_01783 0.85 +0.7 1,876,908 + MPMX20_01783 0.85 +2.2 1,876,908 + MPMX20_01783 0.85 -1.1 1,876,908 + MPMX20_01783 0.85 +0.6 1,876,908 + MPMX20_01783 0.85 -0.4 1,876,908 + MPMX20_01783 0.85 +2.5 1,876,908 + MPMX20_01783 0.85 +1.6 1,876,908 + MPMX20_01783 0.85 -1.4 1,876,908 + MPMX20_01783 0.85 +2.3 1,876,908 + MPMX20_01783 0.85 -1.8 1,876,908 + MPMX20_01783 0.85 -0.9 1,876,908 + MPMX20_01783 0.85 -1.3 1,876,910 + MPMX20_01783 0.86 -0.0 1,876,910 + MPMX20_01783 0.86 -0.2 1,876,910 + MPMX20_01783 0.86 +7.3 1,876,910 + MPMX20_01783 0.86 +3.5 1,876,910 + MPMX20_01783 0.86 +3.5 1,876,910 + MPMX20_01783 0.86 +0.2 1,876,910 + MPMX20_01783 0.86 +0.6 1,876,910 + MPMX20_01783 0.86 -0.9 1,876,916 - +0.6 1,876,916 - +2.2 1,876,916 - -0.0 1,876,916 - -2.1 1,876,916 - +0.2 1,876,918 - -1.1 1,876,918 - -0.8 1,876,939 + +2.1 1,876,943 + +1.8 1,877,153 + MPMX20_01784 0.50 +1.5 1,877,153 + MPMX20_01784 0.50 -1.2 1,877,160 + MPMX20_01784 0.52 -0.3 1,877,161 - MPMX20_01784 0.52 +0.0 1,877,161 - MPMX20_01784 0.52 -0.4 1,877,161 - MPMX20_01784 0.52 -0.4 1,877,161 - MPMX20_01784 0.52 +0.2 1,877,173 - MPMX20_01784 0.56 -1.4 1,877,223 - MPMX20_01784 0.69 +1.0 1,877,245 + MPMX20_01784 0.76 -1.8 1,877,335 + -2.1 1,877,350 + -3.1 1,877,355 - +0.2 1,877,426 - MPMX20_01785 0.25 +1.3 1,877,430 + MPMX20_01785 0.26 +0.2 1,877,440 + MPMX20_01785 0.28 +0.3 1,877,495 + MPMX20_01785 0.43 +0.5 1,877,647 + MPMX20_01785 0.83 -0.6 1,877,649 + MPMX20_01785 0.84 -1.7 1,877,676 - +0.3 1,877,679 + -0.0 1,877,689 + -1.1 1,877,698 - +0.8 1,877,710 + +0.2 1,877,711 + -0.4 1,877,718 - -2.1 1,877,766 + +0.9 1,877,774 - -1.0 1,877,780 + -2.1 1,877,797 - MPMX20_01786 0.12 +1.0 1,877,797 - MPMX20_01786 0.12 +0.0 1,877,807 - MPMX20_01786 0.14 -1.8 1,877,977 - MPMX20_01786 0.40 -0.8 1,878,003 + MPMX20_01786 0.44 -0.9 1,878,003 + MPMX20_01786 0.44 -0.1 1,878,011 - MPMX20_01786 0.45 -1.3 1,878,026 + MPMX20_01786 0.47 -0.3 1,878,026 + MPMX20_01786 0.47 -0.6 1,878,106 + MPMX20_01786 0.60 -0.7 1,878,133 - MPMX20_01786 0.64 +1.2 1,878,143 - MPMX20_01786 0.65 -1.4 1,878,194 + MPMX20_01786 0.73 +0.3 1,878,194 + MPMX20_01786 0.73 +1.3 1,878,197 - MPMX20_01786 0.74 -2.1 1,878,252 + MPMX20_01786 0.82 -3.5 1,878,312 + -2.7 1,878,355 + -0.8 1,878,427 + -0.6 1,878,488 - MPMX20_01787 0.17 +0.6 1,878,488 - MPMX20_01787 0.17 +0.7 1,878,506 + MPMX20_01787 0.19 +1.6 1,878,506 + MPMX20_01787 0.19 -0.1 1,878,506 + MPMX20_01787 0.19 -1.7 1,878,608 + MPMX20_01787 0.32 +1.4 1,878,616 + MPMX20_01787 0.33 -0.5 1,878,616 - MPMX20_01787 0.33 -1.8 1,878,616 - MPMX20_01787 0.33 -0.4 1,878,661 + MPMX20_01787 0.38 +1.3 1,878,681 - MPMX20_01787 0.40 +0.7 1,878,698 + MPMX20_01787 0.43 -0.4 1,878,719 - MPMX20_01787 0.45 +0.1 1,878,765 + MPMX20_01787 0.51 -0.0 1,878,765 + MPMX20_01787 0.51 -4.8 1,878,780 + MPMX20_01787 0.52 -0.8 1,878,780 + MPMX20_01787 0.52 +0.3 1,878,827 + MPMX20_01787 0.58 +1.8 1,878,844 + MPMX20_01787 0.60 +0.8 1,878,852 - MPMX20_01787 0.61 +1.2 1,878,896 - MPMX20_01787 0.67 +3.1 1,878,932 + MPMX20_01787 0.71 -0.5 1,878,961 + MPMX20_01787 0.74 -1.2 1,879,140 - +1.1 1,879,174 - +1.2 1,879,174 - -1.8 1,879,176 + -0.9 1,879,180 + -0.2 1,879,211 + +0.4 1,879,219 - -0.1 1,879,231 - -0.8 1,879,233 + +0.1 1,879,320 - MPMX20_01788 0.13 -3.0 1,879,326 + MPMX20_01788 0.14 -1.6
Or see this region's nucleotide sequence