Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03239 and MPMX20_03240 are separated by 134 nucleotides MPMX20_03240 and MPMX20_03241 are separated by 47 nucleotides MPMX20_03241 and MPMX20_03242 are separated by 8 nucleotides MPMX20_03242 and MPMX20_03243 overlap by 4 nucleotides
MPMX20_03239: MPMX20_03239 - Epimerase family protein, at 3,410,246 to 3,411,139
_03239
MPMX20_03240: MPMX20_03240 - hypothetical protein, at 3,411,274 to 3,411,690
_03240
MPMX20_03241: MPMX20_03241 - Histidine transport ATP-binding protein HisP, at 3,411,738 to 3,412,511
_03241
MPMX20_03242: MPMX20_03242 - Histidine transport system permease protein HisM, at 3,412,520 to 3,413,236
_03242
MPMX20_03243: MPMX20_03243 - Histidine transport system permease protein HisQ, at 3,413,233 to 3,413,919
_03243
Position (kb)
3411
3412
3413 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3410.842 kb on - strand, within MPMX20_03239 at 3410.882 kb on + strand, within MPMX20_03239 at 3410.889 kb on - strand, within MPMX20_03239 at 3410.920 kb on - strand, within MPMX20_03239 at 3410.930 kb on - strand, within MPMX20_03239 at 3410.958 kb on + strand, within MPMX20_03239 at 3411.069 kb on + strand at 3411.138 kb on - strand at 3411.279 kb on + strand at 3411.279 kb on + strand at 3411.279 kb on + strand at 3411.287 kb on - strand at 3411.331 kb on + strand, within MPMX20_03240 at 3411.333 kb on + strand, within MPMX20_03240 at 3411.341 kb on - strand, within MPMX20_03240 at 3411.443 kb on + strand, within MPMX20_03240 at 3411.473 kb on - strand, within MPMX20_03240 at 3411.482 kb on + strand, within MPMX20_03240 at 3411.499 kb on + strand, within MPMX20_03240 at 3411.535 kb on - strand, within MPMX20_03240 at 3411.633 kb on + strand, within MPMX20_03240 at 3411.684 kb on + strand at 3411.697 kb on - strand at 3411.818 kb on - strand, within MPMX20_03241 at 3411.941 kb on - strand, within MPMX20_03241 at 3411.941 kb on - strand, within MPMX20_03241 at 3412.085 kb on + strand, within MPMX20_03241 at 3412.107 kb on + strand, within MPMX20_03241 at 3412.270 kb on + strand, within MPMX20_03241 at 3412.355 kb on + strand, within MPMX20_03241 at 3412.355 kb on + strand, within MPMX20_03241 at 3412.355 kb on + strand, within MPMX20_03241 at 3412.363 kb on - strand, within MPMX20_03241 at 3412.363 kb on - strand, within MPMX20_03241 at 3412.363 kb on - strand, within MPMX20_03241 at 3412.363 kb on - strand, within MPMX20_03241 at 3412.363 kb on - strand, within MPMX20_03241 at 3412.363 kb on - strand, within MPMX20_03241 at 3412.363 kb on - strand, within MPMX20_03241 at 3412.370 kb on + strand, within MPMX20_03241 at 3412.385 kb on - strand, within MPMX20_03241 at 3412.387 kb on - strand, within MPMX20_03241 at 3412.481 kb on + strand at 3412.490 kb on + strand at 3412.556 kb on + strand at 3412.591 kb on - strand at 3412.591 kb on - strand at 3412.650 kb on - strand, within MPMX20_03242 at 3412.693 kb on - strand, within MPMX20_03242 at 3412.706 kb on + strand, within MPMX20_03242 at 3412.709 kb on - strand, within MPMX20_03242 at 3412.714 kb on - strand, within MPMX20_03242 at 3412.714 kb on - strand, within MPMX20_03242 at 3412.724 kb on - strand, within MPMX20_03242 at 3412.802 kb on - strand, within MPMX20_03242 at 3412.855 kb on - strand, within MPMX20_03242 at 3412.918 kb on + strand, within MPMX20_03242 at 3412.918 kb on + strand, within MPMX20_03242 at 3412.928 kb on + strand, within MPMX20_03242 at 3412.928 kb on + strand, within MPMX20_03242 at 3412.928 kb on + strand, within MPMX20_03242 at 3412.928 kb on + strand, within MPMX20_03242 at 3412.931 kb on - strand, within MPMX20_03242 at 3412.936 kb on - strand, within MPMX20_03242 at 3412.936 kb on - strand, within MPMX20_03242 at 3412.936 kb on - strand, within MPMX20_03242 at 3413.001 kb on - strand, within MPMX20_03242 at 3413.001 kb on - strand, within MPMX20_03242 at 3413.042 kb on + strand, within MPMX20_03242 at 3413.193 kb on + strand at 3413.193 kb on + strand at 3413.196 kb on - strand at 3413.244 kb on - strand at 3413.248 kb on + strand at 3413.248 kb on + strand at 3413.248 kb on + strand at 3413.248 kb on + strand at 3413.251 kb on - strand at 3413.256 kb on - strand at 3413.278 kb on - strand at 3413.337 kb on + strand, within MPMX20_03243 at 3413.345 kb on - strand, within MPMX20_03243 at 3413.352 kb on + strand, within MPMX20_03243 at 3413.352 kb on + strand, within MPMX20_03243 at 3413.397 kb on + strand, within MPMX20_03243 at 3413.457 kb on - strand, within MPMX20_03243 at 3413.477 kb on - strand, within MPMX20_03243 at 3413.511 kb on + strand, within MPMX20_03243 at 3413.511 kb on + strand, within MPMX20_03243
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_109 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,410,842 - MPMX20_03239 0.67 -0.9 3,410,882 + MPMX20_03239 0.71 +0.5 3,410,889 - MPMX20_03239 0.72 +1.7 3,410,920 - MPMX20_03239 0.75 +0.0 3,410,930 - MPMX20_03239 0.77 +0.7 3,410,958 + MPMX20_03239 0.80 -1.2 3,411,069 + -0.1 3,411,138 - -0.5 3,411,279 + +0.6 3,411,279 + -0.6 3,411,279 + -1.4 3,411,287 - +1.8 3,411,331 + MPMX20_03240 0.14 +0.5 3,411,333 + MPMX20_03240 0.14 -1.6 3,411,341 - MPMX20_03240 0.16 -0.6 3,411,443 + MPMX20_03240 0.41 -1.1 3,411,473 - MPMX20_03240 0.48 +0.5 3,411,482 + MPMX20_03240 0.50 +0.7 3,411,499 + MPMX20_03240 0.54 -0.5 3,411,535 - MPMX20_03240 0.63 +1.1 3,411,633 + MPMX20_03240 0.86 -0.7 3,411,684 + -0.4 3,411,697 - -0.3 3,411,818 - MPMX20_03241 0.10 -0.5 3,411,941 - MPMX20_03241 0.26 -0.0 3,411,941 - MPMX20_03241 0.26 -0.5 3,412,085 + MPMX20_03241 0.45 -1.7 3,412,107 + MPMX20_03241 0.48 -0.9 3,412,270 + MPMX20_03241 0.69 +1.5 3,412,355 + MPMX20_03241 0.80 -0.3 3,412,355 + MPMX20_03241 0.80 -1.8 3,412,355 + MPMX20_03241 0.80 -0.4 3,412,363 - MPMX20_03241 0.81 -0.7 3,412,363 - MPMX20_03241 0.81 -0.9 3,412,363 - MPMX20_03241 0.81 -2.5 3,412,363 - MPMX20_03241 0.81 -1.0 3,412,363 - MPMX20_03241 0.81 -1.3 3,412,363 - MPMX20_03241 0.81 -2.3 3,412,363 - MPMX20_03241 0.81 -0.9 3,412,370 + MPMX20_03241 0.82 -1.4 3,412,385 - MPMX20_03241 0.84 -3.2 3,412,387 - MPMX20_03241 0.84 -1.4 3,412,481 + -0.9 3,412,490 + +0.1 3,412,556 + +0.5 3,412,591 - -0.8 3,412,591 - +0.9 3,412,650 - MPMX20_03242 0.18 +0.4 3,412,693 - MPMX20_03242 0.24 -0.4 3,412,706 + MPMX20_03242 0.26 +0.3 3,412,709 - MPMX20_03242 0.26 -1.9 3,412,714 - MPMX20_03242 0.27 -0.3 3,412,714 - MPMX20_03242 0.27 +0.2 3,412,724 - MPMX20_03242 0.28 +0.5 3,412,802 - MPMX20_03242 0.39 -0.3 3,412,855 - MPMX20_03242 0.47 -0.0 3,412,918 + MPMX20_03242 0.56 -1.3 3,412,918 + MPMX20_03242 0.56 -0.6 3,412,928 + MPMX20_03242 0.57 -1.4 3,412,928 + MPMX20_03242 0.57 -3.3 3,412,928 + MPMX20_03242 0.57 -0.7 3,412,928 + MPMX20_03242 0.57 -1.5 3,412,931 - MPMX20_03242 0.57 -0.3 3,412,936 - MPMX20_03242 0.58 -1.2 3,412,936 - MPMX20_03242 0.58 -0.7 3,412,936 - MPMX20_03242 0.58 -0.7 3,413,001 - MPMX20_03242 0.67 -1.5 3,413,001 - MPMX20_03242 0.67 +0.9 3,413,042 + MPMX20_03242 0.73 -3.6 3,413,193 + -0.6 3,413,193 + -1.3 3,413,196 - -0.5 3,413,244 - +0.6 3,413,248 + -0.5 3,413,248 + -0.8 3,413,248 + -3.1 3,413,248 + -0.3 3,413,251 - -0.2 3,413,256 - -3.2 3,413,278 - -0.9 3,413,337 + MPMX20_03243 0.15 -1.3 3,413,345 - MPMX20_03243 0.16 -0.4 3,413,352 + MPMX20_03243 0.17 +2.0 3,413,352 + MPMX20_03243 0.17 -1.1 3,413,397 + MPMX20_03243 0.24 +1.8 3,413,457 - MPMX20_03243 0.33 +0.7 3,413,477 - MPMX20_03243 0.36 -0.1 3,413,511 + MPMX20_03243 0.40 -0.7 3,413,511 + MPMX20_03243 0.40 -0.3
Or see this region's nucleotide sequence