Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02820 and thiQ are separated by 232 nucleotides thiQ and thiP overlap by 17 nucleotides
LU632_RS02820: LU632_RS02820 - DedA family protein, at 573,647 to 574,414
_RS02820
LU632_RS02825: thiQ - thiamine ABC transporter ATP-binding protein ThiQ, at 574,647 to 575,348
thiQ
LU632_RS02830: thiP - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 575,332 to 576,942
thiP
Position (kb) 574
575
576 Strain fitness (log2 ratio) -2
-1
0
1 at 573.647 kb on - strand at 573.647 kb on - strand at 573.670 kb on + strand at 573.670 kb on + strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.672 kb on + strand at 573.672 kb on + strand at 573.916 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 574.093 kb on - strand, within LU632_RS02820 at 574.160 kb on - strand, within LU632_RS02820 at 574.165 kb on + strand, within LU632_RS02820 at 574.172 kb on - strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.343 kb on - strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.412 kb on + strand at 574.489 kb on - strand at 574.493 kb on - strand at 574.494 kb on - strand at 574.649 kb on - strand at 574.748 kb on + strand, within thiQ at 574.748 kb on + strand, within thiQ at 574.748 kb on + strand, within thiQ at 574.791 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.809 kb on - strand, within thiQ at 574.809 kb on - strand, within thiQ at 574.824 kb on + strand, within thiQ at 574.824 kb on + strand, within thiQ at 574.825 kb on - strand, within thiQ at 574.825 kb on - strand, within thiQ at 575.013 kb on - strand, within thiQ at 575.091 kb on + strand, within thiQ at 575.283 kb on + strand at 575.284 kb on - strand at 575.284 kb on - strand at 575.317 kb on + strand at 575.333 kb on + strand at 575.343 kb on + strand at 575.639 kb on + strand, within thiP at 575.657 kb on + strand, within thiP at 575.658 kb on - strand, within thiP at 575.716 kb on + strand, within thiP at 575.716 kb on + strand, within thiP at 575.717 kb on - strand, within thiP at 575.717 kb on - strand, within thiP at 575.947 kb on + strand, within thiP at 575.947 kb on + strand, within thiP at 575.977 kb on + strand, within thiP at 575.980 kb on + strand, within thiP at 575.981 kb on - strand, within thiP at 576.088 kb on + strand, within thiP
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 573,647 - -0.1 573,647 - -0.2 573,670 + -0.1 573,670 + -1.1 573,671 - -0.3 573,671 - -2.2 573,671 - +0.1 573,671 - -0.4 573,672 + -0.4 573,672 + +0.5 573,916 + LU632_RS02820 0.35 +1.4 573,975 + LU632_RS02820 0.43 -0.4 573,975 + LU632_RS02820 0.43 +0.1 573,975 + LU632_RS02820 0.43 -1.0 574,093 - LU632_RS02820 0.58 -0.8 574,160 - LU632_RS02820 0.67 +0.9 574,165 + LU632_RS02820 0.67 -1.2 574,172 - LU632_RS02820 0.68 +0.6 574,177 + LU632_RS02820 0.69 +0.1 574,177 + LU632_RS02820 0.69 -0.4 574,177 + LU632_RS02820 0.69 +1.0 574,178 - LU632_RS02820 0.69 -0.5 574,178 - LU632_RS02820 0.69 -0.1 574,178 - LU632_RS02820 0.69 +0.3 574,343 - -0.3 574,386 + -0.3 574,386 + +0.1 574,386 + +0.0 574,412 + -0.1 574,489 - -0.1 574,493 - +0.2 574,494 - +0.2 574,649 - -0.7 574,748 + thiQ LU632_RS02825 0.14 -0.3 574,748 + thiQ LU632_RS02825 0.14 -0.8 574,748 + thiQ LU632_RS02825 0.14 +0.2 574,791 + thiQ LU632_RS02825 0.21 -0.6 574,808 + thiQ LU632_RS02825 0.23 -1.2 574,808 + thiQ LU632_RS02825 0.23 -0.6 574,808 + thiQ LU632_RS02825 0.23 -0.3 574,809 - thiQ LU632_RS02825 0.23 -1.0 574,809 - thiQ LU632_RS02825 0.23 +0.6 574,824 + thiQ LU632_RS02825 0.25 -0.9 574,824 + thiQ LU632_RS02825 0.25 +1.4 574,825 - thiQ LU632_RS02825 0.25 -1.2 574,825 - thiQ LU632_RS02825 0.25 -0.5 575,013 - thiQ LU632_RS02825 0.52 -1.0 575,091 + thiQ LU632_RS02825 0.63 +0.0 575,283 + +0.2 575,284 - -0.6 575,284 - -0.7 575,317 + -0.1 575,333 + +0.0 575,343 + +1.0 575,639 + thiP LU632_RS02830 0.19 -1.0 575,657 + thiP LU632_RS02830 0.20 -0.7 575,658 - thiP LU632_RS02830 0.20 -0.6 575,716 + thiP LU632_RS02830 0.24 -1.2 575,716 + thiP LU632_RS02830 0.24 +0.2 575,717 - thiP LU632_RS02830 0.24 -1.2 575,717 - thiP LU632_RS02830 0.24 -0.9 575,947 + thiP LU632_RS02830 0.38 +0.7 575,947 + thiP LU632_RS02830 0.38 +0.2 575,977 + thiP LU632_RS02830 0.40 +1.6 575,980 + thiP LU632_RS02830 0.40 +0.2 575,981 - thiP LU632_RS02830 0.40 -2.1 576,088 + thiP LU632_RS02830 0.47 -0.5
Or see this region's nucleotide sequence