Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08880

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS08875 and LU632_RS08880 are separated by 75 nucleotidesLU632_RS08880 and LU632_RS08885 are separated by 7 nucleotidesLU632_RS08885 and gndA are separated by 184 nucleotides LU632_RS08875: LU632_RS08875 - hypothetical protein, at 1,675,732 to 1,677,027 _RS08875 LU632_RS08880: LU632_RS08880 - ABC transporter permease, at 1,677,103 to 1,677,828 _RS08880 LU632_RS08885: LU632_RS08885 - ABC transporter ATP-binding protein, at 1,677,836 to 1,678,600 _RS08885 LU632_RS08890: gndA - NADP-dependent phosphogluconate dehydrogenase, at 1,678,785 to 1,680,191 gndA Position (kb) 1677 1678Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1676.260 kb on - strand, within LU632_RS08875at 1676.318 kb on - strand, within LU632_RS08875at 1676.347 kb on - strand, within LU632_RS08875at 1676.347 kb on - strand, within LU632_RS08875at 1676.370 kb on + strand, within LU632_RS08875at 1676.773 kb on - strand, within LU632_RS08875at 1677.166 kb on - strandat 1677.291 kb on + strand, within LU632_RS08880at 1677.599 kb on - strand, within LU632_RS08880at 1677.657 kb on - strand, within LU632_RS08880at 1677.737 kb on - strand, within LU632_RS08880at 1678.060 kb on - strand, within LU632_RS08885at 1678.060 kb on - strand, within LU632_RS08885at 1678.182 kb on - strand, within LU632_RS08885at 1678.292 kb on + strand, within LU632_RS08885at 1678.357 kb on - strand, within LU632_RS08885at 1678.428 kb on + strand, within LU632_RS08885at 1678.428 kb on + strand, within LU632_RS08885at 1678.582 kb on + strandat 1678.783 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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1,676,260 - LU632_RS08875 0.41 -3.0
1,676,318 - LU632_RS08875 0.45 -2.7
1,676,347 - LU632_RS08875 0.47 -2.2
1,676,347 - LU632_RS08875 0.47 -3.5
1,676,370 + LU632_RS08875 0.49 -2.6
1,676,773 - LU632_RS08875 0.80 -2.3
1,677,166 - -6.1
1,677,291 + LU632_RS08880 0.26 -4.1
1,677,599 - LU632_RS08880 0.68 -3.7
1,677,657 - LU632_RS08880 0.76 -2.6
1,677,737 - LU632_RS08880 0.87 -3.4
1,678,060 - LU632_RS08885 0.29 -3.8
1,678,060 - LU632_RS08885 0.29 -4.5
1,678,182 - LU632_RS08885 0.45 -2.0
1,678,292 + LU632_RS08885 0.60 -3.2
1,678,357 - LU632_RS08885 0.68 -3.7
1,678,428 + LU632_RS08885 0.77 -5.9
1,678,428 + LU632_RS08885 0.77 -2.7
1,678,582 + +0.1
1,678,783 + +0.8

Or see this region's nucleotide sequence