Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08875

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS08870 and LU632_RS08875 are separated by 29 nucleotidesLU632_RS08875 and LU632_RS08880 are separated by 75 nucleotidesLU632_RS08880 and LU632_RS08885 are separated by 7 nucleotides LU632_RS08870: LU632_RS08870 - glycosyltransferase family 2 protein, at 1,674,761 to 1,675,702 _RS08870 LU632_RS08875: LU632_RS08875 - hypothetical protein, at 1,675,732 to 1,677,027 _RS08875 LU632_RS08880: LU632_RS08880 - ABC transporter permease, at 1,677,103 to 1,677,828 _RS08880 LU632_RS08885: LU632_RS08885 - ABC transporter ATP-binding protein, at 1,677,836 to 1,678,600 _RS08885 Position (kb) 1675 1676 1677 1678Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1674.746 kb on + strandat 1674.781 kb on + strandat 1674.914 kb on - strand, within LU632_RS08870at 1674.924 kb on - strand, within LU632_RS08870at 1675.090 kb on - strand, within LU632_RS08870at 1675.133 kb on - strand, within LU632_RS08870at 1675.420 kb on + strand, within LU632_RS08870at 1675.420 kb on - strand, within LU632_RS08870at 1675.422 kb on + strand, within LU632_RS08870at 1675.423 kb on - strand, within LU632_RS08870at 1675.423 kb on - strand, within LU632_RS08870at 1676.260 kb on - strand, within LU632_RS08875at 1676.318 kb on - strand, within LU632_RS08875at 1676.347 kb on - strand, within LU632_RS08875at 1676.347 kb on - strand, within LU632_RS08875at 1676.370 kb on + strand, within LU632_RS08875at 1676.773 kb on - strand, within LU632_RS08875at 1677.166 kb on - strandat 1677.291 kb on + strand, within LU632_RS08880at 1677.599 kb on - strand, within LU632_RS08880at 1677.657 kb on - strand, within LU632_RS08880at 1677.737 kb on - strand, within LU632_RS08880

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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1,674,746 + -0.2
1,674,781 + -4.4
1,674,914 - LU632_RS08870 0.16 -2.6
1,674,924 - LU632_RS08870 0.17 -3.7
1,675,090 - LU632_RS08870 0.35 -3.4
1,675,133 - LU632_RS08870 0.39 -4.1
1,675,420 + LU632_RS08870 0.70 -4.0
1,675,420 - LU632_RS08870 0.70 -4.3
1,675,422 + LU632_RS08870 0.70 -4.2
1,675,423 - LU632_RS08870 0.70 -2.7
1,675,423 - LU632_RS08870 0.70 -4.7
1,676,260 - LU632_RS08875 0.41 -3.0
1,676,318 - LU632_RS08875 0.45 -2.7
1,676,347 - LU632_RS08875 0.47 -2.2
1,676,347 - LU632_RS08875 0.47 -3.5
1,676,370 + LU632_RS08875 0.49 -2.6
1,676,773 - LU632_RS08875 0.80 -2.3
1,677,166 - -6.1
1,677,291 + LU632_RS08880 0.26 -4.1
1,677,599 - LU632_RS08880 0.68 -3.7
1,677,657 - LU632_RS08880 0.76 -2.6
1,677,737 - LU632_RS08880 0.87 -3.4

Or see this region's nucleotide sequence