Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01540 and LU632_RS01545 overlap by 35 nucleotides LU632_RS01545 and LU632_RS01550 are separated by 55 nucleotides LU632_RS01550 and LU632_RS01555 overlap by 4 nucleotides LU632_RS01555 and LU632_RS01560 are separated by 249 nucleotides
LU632_RS01540: LU632_RS01540 - replication endonuclease, at 309,566 to 312,061
_RS01540
LU632_RS01545: LU632_RS01545 - hypothetical protein, at 312,027 to 312,452
_RS01545
LU632_RS01550: LU632_RS01550 - type II toxin-antitoxin system HicA family toxin, at 312,508 to 312,783
_RS01550
LU632_RS01555: LU632_RS01555 - type II toxin-antitoxin system HicB family antitoxin, at 312,780 to 313,139
_RS01555
LU632_RS01560: LU632_RS01560 - DNA adenine methylase, at 313,389 to 314,084
_RS01560
Position (kb) 312
313
314 Strain fitness (log2 ratio) -2
-1
0
1 at 311.856 kb on + strand at 311.858 kb on + strand at 311.858 kb on + strand at 311.858 kb on + strand at 311.858 kb on + strand at 311.858 kb on + strand at 311.858 kb on + strand at 311.858 kb on + strand at 311.859 kb on - strand at 311.859 kb on - strand at 311.862 kb on + strand at 311.862 kb on + strand at 311.862 kb on + strand at 311.862 kb on + strand at 311.863 kb on - strand at 311.863 kb on - strand at 311.908 kb on + strand at 311.908 kb on + strand at 311.909 kb on - strand at 311.909 kb on - strand at 312.153 kb on + strand, within LU632_RS01545 at 312.154 kb on - strand, within LU632_RS01545 at 312.154 kb on - strand, within LU632_RS01545 at 312.155 kb on + strand, within LU632_RS01545 at 312.155 kb on + strand, within LU632_RS01545 at 312.155 kb on + strand, within LU632_RS01545 at 312.155 kb on + strand, within LU632_RS01545 at 312.155 kb on + strand, within LU632_RS01545 at 312.155 kb on + strand, within LU632_RS01545 at 312.155 kb on + strand, within LU632_RS01545 at 312.156 kb on - strand, within LU632_RS01545 at 312.156 kb on - strand, within LU632_RS01545 at 312.156 kb on - strand, within LU632_RS01545 at 312.156 kb on - strand, within LU632_RS01545 at 312.156 kb on - strand, within LU632_RS01545 at 312.157 kb on + strand, within LU632_RS01545 at 312.157 kb on + strand, within LU632_RS01545 at 312.157 kb on + strand, within LU632_RS01545 at 312.157 kb on + strand, within LU632_RS01545 at 312.157 kb on + strand, within LU632_RS01545 at 312.157 kb on + strand, within LU632_RS01545 at 312.158 kb on - strand, within LU632_RS01545 at 312.158 kb on - strand, within LU632_RS01545 at 312.158 kb on - strand, within LU632_RS01545 at 312.199 kb on + strand, within LU632_RS01545 at 312.199 kb on + strand, within LU632_RS01545 at 312.199 kb on + strand, within LU632_RS01545 at 312.226 kb on + strand, within LU632_RS01545 at 312.354 kb on + strand, within LU632_RS01545 at 312.377 kb on + strand, within LU632_RS01545 at 312.377 kb on + strand, within LU632_RS01545 at 312.377 kb on + strand, within LU632_RS01545 at 312.378 kb on - strand, within LU632_RS01545 at 312.378 kb on - strand, within LU632_RS01545 at 312.378 kb on - strand, within LU632_RS01545 at 312.428 kb on + strand at 312.472 kb on - strand at 312.639 kb on + strand, within LU632_RS01550 at 312.803 kb on + strand at 312.840 kb on + strand, within LU632_RS01555 at 312.914 kb on + strand, within LU632_RS01555 at 312.971 kb on + strand, within LU632_RS01555 at 312.971 kb on + strand, within LU632_RS01555 at 312.985 kb on + strand, within LU632_RS01555 at 312.985 kb on + strand, within LU632_RS01555 at 312.985 kb on + strand, within LU632_RS01555 at 313.085 kb on - strand, within LU632_RS01555 at 313.158 kb on + strand at 313.158 kb on + strand at 313.158 kb on + strand at 313.159 kb on - strand at 313.159 kb on - strand at 313.159 kb on - strand at 313.237 kb on - strand at 313.310 kb on - strand at 313.361 kb on - strand at 313.385 kb on - strand at 313.396 kb on - strand at 313.396 kb on - strand at 313.461 kb on - strand, within LU632_RS01560 at 313.464 kb on + strand, within LU632_RS01560 at 313.464 kb on + strand, within LU632_RS01560 at 313.464 kb on + strand, within LU632_RS01560 at 313.465 kb on - strand, within LU632_RS01560 at 313.526 kb on + strand, within LU632_RS01560 at 313.556 kb on + strand, within LU632_RS01560 at 313.615 kb on - strand, within LU632_RS01560 at 313.615 kb on - strand, within LU632_RS01560 at 313.740 kb on + strand, within LU632_RS01560 at 313.768 kb on + strand, within LU632_RS01560 at 313.833 kb on + strand, within LU632_RS01560 at 313.921 kb on - strand, within LU632_RS01560 at 313.982 kb on + strand, within LU632_RS01560 at 313.982 kb on + strand, within LU632_RS01560 at 313.982 kb on + strand, within LU632_RS01560 at 313.985 kb on + strand, within LU632_RS01560
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 311,856 + -0.2 311,858 + +0.2 311,858 + -0.4 311,858 + +0.0 311,858 + +0.6 311,858 + -1.7 311,858 + +0.9 311,858 + +0.5 311,859 - -0.2 311,859 - +1.2 311,862 + +0.9 311,862 + -0.1 311,862 + +0.0 311,862 + -0.8 311,863 - -0.4 311,863 - +0.3 311,908 + -0.5 311,908 + -0.1 311,909 - -0.1 311,909 - -0.4 312,153 + LU632_RS01545 0.30 -0.6 312,154 - LU632_RS01545 0.30 -0.1 312,154 - LU632_RS01545 0.30 -0.8 312,155 + LU632_RS01545 0.30 +0.1 312,155 + LU632_RS01545 0.30 -0.1 312,155 + LU632_RS01545 0.30 +0.4 312,155 + LU632_RS01545 0.30 +0.0 312,155 + LU632_RS01545 0.30 -0.0 312,155 + LU632_RS01545 0.30 +0.2 312,155 + LU632_RS01545 0.30 +0.3 312,156 - LU632_RS01545 0.30 -0.2 312,156 - LU632_RS01545 0.30 -0.5 312,156 - LU632_RS01545 0.30 -0.8 312,156 - LU632_RS01545 0.30 +1.5 312,156 - LU632_RS01545 0.30 -0.7 312,157 + LU632_RS01545 0.31 +0.1 312,157 + LU632_RS01545 0.31 +0.7 312,157 + LU632_RS01545 0.31 -0.4 312,157 + LU632_RS01545 0.31 -0.6 312,157 + LU632_RS01545 0.31 -0.1 312,157 + LU632_RS01545 0.31 +0.5 312,158 - LU632_RS01545 0.31 -0.7 312,158 - LU632_RS01545 0.31 -0.1 312,158 - LU632_RS01545 0.31 -1.1 312,199 + LU632_RS01545 0.40 -0.1 312,199 + LU632_RS01545 0.40 +0.1 312,199 + LU632_RS01545 0.40 -1.0 312,226 + LU632_RS01545 0.47 -0.6 312,354 + LU632_RS01545 0.77 +0.2 312,377 + LU632_RS01545 0.82 +0.5 312,377 + LU632_RS01545 0.82 +0.1 312,377 + LU632_RS01545 0.82 -0.8 312,378 - LU632_RS01545 0.82 -0.2 312,378 - LU632_RS01545 0.82 +0.6 312,378 - LU632_RS01545 0.82 +0.3 312,428 + +0.2 312,472 - +0.4 312,639 + LU632_RS01550 0.47 +0.7 312,803 + -1.8 312,840 + LU632_RS01555 0.17 -1.1 312,914 + LU632_RS01555 0.37 -0.5 312,971 + LU632_RS01555 0.53 -0.9 312,971 + LU632_RS01555 0.53 -1.6 312,985 + LU632_RS01555 0.57 -0.2 312,985 + LU632_RS01555 0.57 +0.5 312,985 + LU632_RS01555 0.57 -0.8 313,085 - LU632_RS01555 0.85 -0.8 313,158 + -0.3 313,158 + +0.0 313,158 + +0.8 313,159 - +1.2 313,159 - +0.1 313,159 - -1.4 313,237 - +0.2 313,310 - +0.2 313,361 - -0.6 313,385 - +0.3 313,396 - -0.4 313,396 - -0.7 313,461 - LU632_RS01560 0.10 -0.8 313,464 + LU632_RS01560 0.11 +0.6 313,464 + LU632_RS01560 0.11 +0.2 313,464 + LU632_RS01560 0.11 -0.0 313,465 - LU632_RS01560 0.11 +0.2 313,526 + LU632_RS01560 0.20 -1.3 313,556 + LU632_RS01560 0.24 -0.3 313,615 - LU632_RS01560 0.32 +0.3 313,615 - LU632_RS01560 0.32 +0.2 313,740 + LU632_RS01560 0.50 +0.3 313,768 + LU632_RS01560 0.54 -0.1 313,833 + LU632_RS01560 0.64 -0.2 313,921 - LU632_RS01560 0.76 -0.1 313,982 + LU632_RS01560 0.85 -0.3 313,982 + LU632_RS01560 0.85 -0.8 313,982 + LU632_RS01560 0.85 -0.3 313,985 + LU632_RS01560 0.86 -0.3
Or see this region's nucleotide sequence