Experiment: KB with Paclitaxel 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3608 and Psyr_RNA57 are separated by 131 nucleotides Psyr_RNA57 and Psyr_RNA58 are separated by 4 nucleotides Psyr_RNA58 and Psyr_RNA59 are separated by 100 nucleotides Psyr_RNA59 and Psyr_RNA60 are separated by 2 nucleotides Psyr_RNA60 and Psyr_3609 are separated by 304 nucleotides Psyr_3609 and Psyr_3610 are separated by 50 nucleotides Psyr_3610 and Psyr_3611 overlap by 4 nucleotides
Psyr_3608: Psyr_3608 - Pirin, N-terminal, at 4,291,591 to 4,292,313
_3608
Psyr_RNA57: Psyr_RNA57 - tRNA-Gly, at 4,292,445 to 4,292,520
_RNA57
Psyr_RNA58: Psyr_RNA58 - tRNA-Glu, at 4,292,525 to 4,292,600
_RNA58
Psyr_RNA59: Psyr_RNA59 - tRNA-Gly, at 4,292,701 to 4,292,776
_RNA59
Psyr_RNA60: Psyr_RNA60 - tRNA-Glu, at 4,292,779 to 4,292,854
_RNA60
Psyr_3609: Psyr_3609 - conserved hypothetical protein, at 4,293,159 to 4,293,917
_3609
Psyr_3610: Psyr_3610 - GAF, at 4,293,968 to 4,294,450
_3610
Psyr_3611: Psyr_3611 - Protein of unknown function DUF815, at 4,294,447 to 4,295,337
_3611
Position (kb) 4293
4294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.357 kb on - strand at 4292.357 kb on - strand at 4292.357 kb on - strand at 4292.357 kb on - strand at 4292.357 kb on - strand at 4292.358 kb on + strand at 4292.359 kb on - strand at 4292.359 kb on - strand at 4292.359 kb on - strand at 4292.380 kb on + strand at 4292.381 kb on - strand at 4292.394 kb on + strand at 4292.861 kb on - strand at 4292.861 kb on - strand at 4292.861 kb on - strand at 4292.861 kb on - strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.045 kb on + strand at 4293.046 kb on - strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.082 kb on + strand at 4293.082 kb on + strand at 4293.082 kb on + strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.092 kb on - strand at 4293.122 kb on + strand at 4293.122 kb on + strand at 4293.123 kb on - strand at 4293.175 kb on + strand at 4293.175 kb on + strand at 4293.175 kb on + strand at 4293.176 kb on - strand at 4293.179 kb on - strand at 4293.469 kb on + strand, within Psyr_3609 at 4293.726 kb on + strand, within Psyr_3609 at 4293.727 kb on - strand, within Psyr_3609 at 4293.727 kb on - strand, within Psyr_3609 at 4293.756 kb on + strand, within Psyr_3609 at 4293.756 kb on + strand, within Psyr_3609 at 4293.757 kb on - strand, within Psyr_3609 at 4293.757 kb on - strand, within Psyr_3609 at 4293.909 kb on + strand at 4293.909 kb on + strand at 4293.909 kb on + strand at 4293.909 kb on + strand at 4293.909 kb on + strand at 4293.909 kb on + strand at 4293.910 kb on - strand at 4293.910 kb on - strand at 4293.910 kb on - strand at 4294.287 kb on + strand, within Psyr_3610 at 4294.324 kb on - strand, within Psyr_3610 at 4294.634 kb on + strand, within Psyr_3611 at 4294.635 kb on - strand, within Psyr_3611 at 4294.803 kb on - strand, within Psyr_3611 at 4294.846 kb on + strand, within Psyr_3611 at 4294.847 kb on - strand, within Psyr_3611
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Paclitaxel 10 mM remove 4,292,354 + -0.5 4,292,354 + -0.4 4,292,354 + +0.3 4,292,354 + -0.5 4,292,354 + +0.0 4,292,354 + -3.4 4,292,354 + +1.1 4,292,355 - +0.1 4,292,355 - +0.1 4,292,355 - -2.6 4,292,355 - -0.9 4,292,355 - -0.0 4,292,355 - -0.1 4,292,356 + -2.5 4,292,356 + +2.9 4,292,356 + -2.6 4,292,356 + -0.8 4,292,356 + +0.6 4,292,356 + -0.7 4,292,357 - +0.1 4,292,357 - -0.4 4,292,357 - +0.7 4,292,357 - -0.5 4,292,357 - -0.2 4,292,358 + -1.3 4,292,359 - -0.9 4,292,359 - -0.0 4,292,359 - +2.1 4,292,380 + -1.6 4,292,381 - +0.7 4,292,394 + +0.2 4,292,861 - -1.2 4,292,861 - -0.9 4,292,861 - -1.8 4,292,861 - -0.5 4,293,043 + +1.5 4,293,043 + -1.2 4,293,043 + -1.5 4,293,043 + +0.6 4,293,043 + -0.7 4,293,043 + -0.7 4,293,043 + +2.1 4,293,043 + +0.1 4,293,043 + +1.5 4,293,043 + +1.1 4,293,043 + -0.1 4,293,043 + -0.2 4,293,044 - +2.3 4,293,044 - -0.9 4,293,044 - -0.6 4,293,044 - -0.0 4,293,044 - -0.7 4,293,044 - +0.1 4,293,044 - -1.7 4,293,044 - +1.4 4,293,044 - +0.0 4,293,044 - -0.4 4,293,044 - -0.6 4,293,045 + +0.4 4,293,046 - -0.0 4,293,047 + +0.1 4,293,047 + -0.8 4,293,047 + -0.1 4,293,047 + -1.6 4,293,047 + +1.1 4,293,048 - -0.8 4,293,048 - -0.9 4,293,048 - +3.4 4,293,082 + +2.1 4,293,082 + +2.1 4,293,082 + +0.2 4,293,083 - +3.1 4,293,083 - -0.4 4,293,083 - -1.2 4,293,083 - -0.9 4,293,092 - +0.4 4,293,122 + -1.1 4,293,122 + +1.9 4,293,123 - -0.3 4,293,175 + -0.3 4,293,175 + -0.9 4,293,175 + +4.1 4,293,176 - +0.4 4,293,179 - +0.1 4,293,469 + Psyr_3609 0.41 +0.4 4,293,726 + Psyr_3609 0.75 +1.8 4,293,727 - Psyr_3609 0.75 -0.5 4,293,727 - Psyr_3609 0.75 +1.1 4,293,756 + Psyr_3609 0.79 -0.7 4,293,756 + Psyr_3609 0.79 -0.5 4,293,757 - Psyr_3609 0.79 +1.6 4,293,757 - Psyr_3609 0.79 -0.0 4,293,909 + +0.1 4,293,909 + -0.0 4,293,909 + +0.9 4,293,909 + +1.9 4,293,909 + -0.6 4,293,909 + -0.3 4,293,910 - -1.6 4,293,910 - -0.1 4,293,910 - +0.1 4,294,287 + Psyr_3610 0.66 +0.1 4,294,324 - Psyr_3610 0.74 -0.1 4,294,634 + Psyr_3611 0.21 -2.2 4,294,635 - Psyr_3611 0.21 +3.1 4,294,803 - Psyr_3611 0.40 +1.3 4,294,846 + Psyr_3611 0.45 +3.4 4,294,847 - Psyr_3611 0.45 -1.6
Or see this region's nucleotide sequence