Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.964.1 and Xcc-8004.965.1 are separated by 90 nucleotides Xcc-8004.965.1 and Xcc-8004.966.1 are separated by 40 nucleotides
Xcc-8004.964.1: Xcc-8004.964.1 - Choline dehydrogenase (EC 1.1.99.1), at 914,024 to 915,694
Xcc-8004.964.1
Xcc-8004.965.1: Xcc-8004.965.1 - Betaine aldehyde dehydrogenase (EC 1.2.1.8), at 915,785 to 917,257
Xcc-8004.965.1
Xcc-8004.966.1: Xcc-8004.966.1 - High-affinity choline uptake protein BetT, at 917,298 to 919,277
Xcc-8004.966.1
Position (kb) 915
916
917
918 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 914.927 kb on + strand, within Xcc-8004.964.1 at 914.928 kb on - strand, within Xcc-8004.964.1 at 914.979 kb on + strand, within Xcc-8004.964.1 at 915.277 kb on - strand, within Xcc-8004.964.1 at 915.318 kb on + strand, within Xcc-8004.964.1 at 915.402 kb on + strand, within Xcc-8004.964.1 at 915.403 kb on - strand, within Xcc-8004.964.1 at 915.403 kb on - strand, within Xcc-8004.964.1 at 915.403 kb on - strand, within Xcc-8004.964.1 at 915.403 kb on - strand, within Xcc-8004.964.1 at 915.403 kb on - strand, within Xcc-8004.964.1 at 915.403 kb on - strand, within Xcc-8004.964.1 at 915.498 kb on + strand, within Xcc-8004.964.1 at 915.641 kb on + strand at 915.641 kb on + strand at 915.641 kb on + strand at 915.642 kb on - strand at 915.675 kb on + strand at 915.676 kb on - strand at 915.676 kb on - strand at 915.681 kb on + strand at 915.764 kb on + strand at 915.764 kb on + strand at 915.801 kb on + strand at 915.841 kb on - strand at 916.155 kb on + strand, within Xcc-8004.965.1 at 916.155 kb on + strand, within Xcc-8004.965.1 at 916.155 kb on + strand, within Xcc-8004.965.1 at 916.156 kb on - strand, within Xcc-8004.965.1 at 916.420 kb on - strand, within Xcc-8004.965.1 at 916.797 kb on + strand, within Xcc-8004.965.1 at 916.848 kb on + strand, within Xcc-8004.965.1 at 916.911 kb on + strand, within Xcc-8004.965.1 at 916.912 kb on - strand, within Xcc-8004.965.1 at 916.912 kb on - strand, within Xcc-8004.965.1 at 916.915 kb on - strand, within Xcc-8004.965.1 at 917.214 kb on + strand at 917.214 kb on + strand at 917.214 kb on + strand at 917.229 kb on + strand at 917.230 kb on - strand at 917.336 kb on - strand at 917.390 kb on - strand at 917.413 kb on + strand at 917.413 kb on + strand at 917.414 kb on - strand at 917.414 kb on - strand at 917.429 kb on - strand at 917.429 kb on - strand at 917.641 kb on + strand, within Xcc-8004.966.1 at 917.641 kb on + strand, within Xcc-8004.966.1 at 918.083 kb on - strand, within Xcc-8004.966.1 at 918.083 kb on - strand, within Xcc-8004.966.1 at 918.255 kb on - strand, within Xcc-8004.966.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 914,927 + Xcc-8004.964.1 0.54 +0.5 914,928 - Xcc-8004.964.1 0.54 +0.8 914,979 + Xcc-8004.964.1 0.57 +0.1 915,277 - Xcc-8004.964.1 0.75 +2.3 915,318 + Xcc-8004.964.1 0.77 -1.1 915,402 + Xcc-8004.964.1 0.82 +0.5 915,403 - Xcc-8004.964.1 0.83 -1.1 915,403 - Xcc-8004.964.1 0.83 +1.4 915,403 - Xcc-8004.964.1 0.83 -0.7 915,403 - Xcc-8004.964.1 0.83 +0.2 915,403 - Xcc-8004.964.1 0.83 +0.6 915,403 - Xcc-8004.964.1 0.83 +1.3 915,498 + Xcc-8004.964.1 0.88 +1.0 915,641 + +0.3 915,641 + -1.7 915,641 + +0.0 915,642 - -1.9 915,675 + -1.3 915,676 - -0.6 915,676 - -1.0 915,681 + +0.3 915,764 + +0.3 915,764 + +1.4 915,801 + -0.9 915,841 - -2.1 916,155 + Xcc-8004.965.1 0.25 -2.8 916,155 + Xcc-8004.965.1 0.25 +1.4 916,155 + Xcc-8004.965.1 0.25 -0.7 916,156 - Xcc-8004.965.1 0.25 -1.0 916,420 - Xcc-8004.965.1 0.43 -1.5 916,797 + Xcc-8004.965.1 0.69 -1.5 916,848 + Xcc-8004.965.1 0.72 -2.0 916,911 + Xcc-8004.965.1 0.76 +0.4 916,912 - Xcc-8004.965.1 0.77 -0.7 916,912 - Xcc-8004.965.1 0.77 +0.1 916,915 - Xcc-8004.965.1 0.77 +3.9 917,214 + +0.1 917,214 + -0.2 917,214 + -1.0 917,229 + -0.8 917,230 - -3.1 917,336 - -1.7 917,390 - -1.6 917,413 + +2.8 917,413 + -1.4 917,414 - +0.6 917,414 - -2.8 917,429 - -0.1 917,429 - -0.3 917,641 + Xcc-8004.966.1 0.17 +0.2 917,641 + Xcc-8004.966.1 0.17 +0.8 918,083 - Xcc-8004.966.1 0.40 -0.5 918,083 - Xcc-8004.966.1 0.40 -0.9 918,255 - Xcc-8004.966.1 0.48 +1.6
Or see this region's nucleotide sequence