Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07130 and BWI76_RS07135 are separated by 31 nucleotides BWI76_RS07135 and BWI76_RS07140 are separated by 363 nucleotides
BWI76_RS07130: BWI76_RS07130 - MFS family transporter, at 1,497,870 to 1,499,105
_RS07130
BWI76_RS07135: BWI76_RS07135 - hypothetical protein, at 1,499,137 to 1,499,850
_RS07135
BWI76_RS07140: BWI76_RS07140 - hypothetical protein, at 1,500,214 to 1,500,534
_RS07140
Position (kb)
1499
1500 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1498.161 kb on + strand, within BWI76_RS07130 at 1498.161 kb on + strand, within BWI76_RS07130 at 1498.193 kb on + strand, within BWI76_RS07130 at 1498.209 kb on + strand, within BWI76_RS07130 at 1498.214 kb on + strand, within BWI76_RS07130 at 1498.214 kb on + strand, within BWI76_RS07130 at 1498.214 kb on + strand, within BWI76_RS07130 at 1498.214 kb on + strand, within BWI76_RS07130 at 1498.222 kb on - strand, within BWI76_RS07130 at 1498.222 kb on - strand, within BWI76_RS07130 at 1498.222 kb on - strand, within BWI76_RS07130 at 1498.227 kb on + strand, within BWI76_RS07130 at 1498.228 kb on + strand, within BWI76_RS07130 at 1498.228 kb on - strand, within BWI76_RS07130 at 1498.236 kb on - strand, within BWI76_RS07130 at 1498.236 kb on - strand, within BWI76_RS07130 at 1498.282 kb on + strand, within BWI76_RS07130 at 1498.283 kb on + strand, within BWI76_RS07130 at 1498.291 kb on - strand at 1498.296 kb on - strand, within BWI76_RS07130 at 1498.346 kb on - strand, within BWI76_RS07130 at 1498.347 kb on - strand, within BWI76_RS07130 at 1498.360 kb on - strand, within BWI76_RS07130 at 1498.363 kb on + strand, within BWI76_RS07130 at 1498.365 kb on + strand, within BWI76_RS07130 at 1498.393 kb on - strand, within BWI76_RS07130 at 1498.432 kb on + strand, within BWI76_RS07130 at 1498.432 kb on + strand, within BWI76_RS07130 at 1498.440 kb on - strand, within BWI76_RS07130 at 1498.440 kb on - strand, within BWI76_RS07130 at 1498.449 kb on + strand, within BWI76_RS07130 at 1498.449 kb on + strand, within BWI76_RS07130 at 1498.450 kb on - strand, within BWI76_RS07130 at 1498.450 kb on - strand at 1498.451 kb on + strand, within BWI76_RS07130 at 1498.457 kb on - strand, within BWI76_RS07130 at 1498.459 kb on - strand, within BWI76_RS07130 at 1498.459 kb on - strand, within BWI76_RS07130 at 1498.459 kb on - strand, within BWI76_RS07130 at 1498.463 kb on - strand, within BWI76_RS07130 at 1498.464 kb on + strand, within BWI76_RS07130 at 1498.464 kb on + strand, within BWI76_RS07130 at 1498.465 kb on + strand, within BWI76_RS07130 at 1498.473 kb on - strand, within BWI76_RS07130 at 1498.473 kb on - strand, within BWI76_RS07130 at 1498.473 kb on - strand, within BWI76_RS07130 at 1498.473 kb on - strand, within BWI76_RS07130 at 1498.473 kb on - strand, within BWI76_RS07130 at 1498.473 kb on - strand, within BWI76_RS07130 at 1498.475 kb on + strand, within BWI76_RS07130 at 1498.475 kb on + strand, within BWI76_RS07130 at 1498.475 kb on + strand, within BWI76_RS07130 at 1498.475 kb on + strand, within BWI76_RS07130 at 1498.475 kb on + strand, within BWI76_RS07130 at 1498.483 kb on - strand, within BWI76_RS07130 at 1498.483 kb on - strand, within BWI76_RS07130 at 1498.483 kb on - strand, within BWI76_RS07130 at 1498.498 kb on + strand, within BWI76_RS07130 at 1498.562 kb on - strand, within BWI76_RS07130 at 1498.607 kb on - strand, within BWI76_RS07130 at 1498.615 kb on - strand, within BWI76_RS07130 at 1498.696 kb on - strand, within BWI76_RS07130 at 1498.696 kb on - strand, within BWI76_RS07130 at 1498.749 kb on + strand, within BWI76_RS07130 at 1498.756 kb on + strand, within BWI76_RS07130 at 1498.771 kb on + strand, within BWI76_RS07130 at 1498.771 kb on + strand, within BWI76_RS07130 at 1498.778 kb on - strand, within BWI76_RS07130 at 1498.832 kb on + strand, within BWI76_RS07130 at 1498.850 kb on + strand, within BWI76_RS07130 at 1498.850 kb on + strand, within BWI76_RS07130 at 1498.850 kb on + strand, within BWI76_RS07130 at 1498.912 kb on + strand, within BWI76_RS07130 at 1498.920 kb on - strand, within BWI76_RS07130 at 1498.968 kb on - strand, within BWI76_RS07130 at 1498.993 kb on + strand at 1498.998 kb on + strand at 1499.006 kb on - strand at 1499.142 kb on - strand at 1499.160 kb on + strand at 1499.167 kb on + strand at 1499.209 kb on + strand, within BWI76_RS07135 at 1499.209 kb on + strand, within BWI76_RS07135 at 1499.215 kb on + strand, within BWI76_RS07135 at 1499.228 kb on + strand, within BWI76_RS07135 at 1499.236 kb on - strand, within BWI76_RS07135 at 1499.236 kb on - strand, within BWI76_RS07135 at 1499.293 kb on + strand, within BWI76_RS07135 at 1499.293 kb on + strand, within BWI76_RS07135 at 1499.293 kb on + strand, within BWI76_RS07135 at 1499.300 kb on + strand, within BWI76_RS07135 at 1499.301 kb on - strand, within BWI76_RS07135 at 1499.305 kb on + strand, within BWI76_RS07135 at 1499.305 kb on + strand, within BWI76_RS07135 at 1499.308 kb on - strand, within BWI76_RS07135 at 1499.308 kb on - strand, within BWI76_RS07135 at 1499.313 kb on - strand, within BWI76_RS07135 at 1499.318 kb on + strand, within BWI76_RS07135 at 1499.318 kb on + strand, within BWI76_RS07135 at 1499.318 kb on + strand, within BWI76_RS07135 at 1499.318 kb on + strand, within BWI76_RS07135 at 1499.326 kb on - strand, within BWI76_RS07135 at 1499.326 kb on - strand, within BWI76_RS07135 at 1499.326 kb on - strand, within BWI76_RS07135 at 1499.332 kb on + strand, within BWI76_RS07135 at 1499.332 kb on + strand, within BWI76_RS07135 at 1499.361 kb on + strand, within BWI76_RS07135 at 1499.361 kb on + strand, within BWI76_RS07135 at 1499.361 kb on + strand, within BWI76_RS07135 at 1499.361 kb on + strand, within BWI76_RS07135 at 1499.369 kb on - strand, within BWI76_RS07135 at 1499.371 kb on + strand, within BWI76_RS07135 at 1499.371 kb on - strand, within BWI76_RS07135 at 1499.389 kb on + strand, within BWI76_RS07135 at 1499.389 kb on + strand, within BWI76_RS07135 at 1499.397 kb on - strand, within BWI76_RS07135 at 1499.420 kb on + strand, within BWI76_RS07135 at 1499.428 kb on - strand, within BWI76_RS07135 at 1499.455 kb on + strand, within BWI76_RS07135 at 1499.551 kb on + strand, within BWI76_RS07135 at 1499.647 kb on + strand, within BWI76_RS07135 at 1499.786 kb on + strand at 1499.806 kb on - strand at 1499.808 kb on + strand at 1499.808 kb on + strand at 1499.808 kb on + strand at 1499.808 kb on + strand at 1499.808 kb on + strand at 1499.808 kb on + strand at 1499.808 kb on + strand at 1499.808 kb on + strand at 1499.808 kb on + strand at 1499.808 kb on + strand at 1499.808 kb on + strand at 1499.808 kb on + strand at 1499.816 kb on - strand at 1499.818 kb on + strand at 1499.818 kb on + strand at 1499.818 kb on + strand at 1499.818 kb on + strand at 1499.823 kb on + strand at 1499.823 kb on + strand at 1499.831 kb on + strand at 1499.837 kb on + strand at 1499.837 kb on + strand at 1499.888 kb on + strand at 1499.888 kb on + strand at 1499.902 kb on + strand at 1499.906 kb on + strand at 1499.944 kb on - strand at 1499.944 kb on - strand at 1499.944 kb on - strand at 1499.995 kb on - strand at 1500.000 kb on + strand at 1500.000 kb on - strand at 1500.000 kb on - strand at 1500.000 kb on - strand at 1500.000 kb on - strand at 1500.000 kb on - strand at 1500.047 kb on - strand at 1500.047 kb on - strand at 1500.047 kb on - strand at 1500.078 kb on - strand at 1500.078 kb on - strand at 1500.097 kb on - strand at 1500.099 kb on - strand at 1500.099 kb on - strand at 1500.185 kb on - strand at 1500.193 kb on - strand at 1500.281 kb on - strand, within BWI76_RS07140 at 1500.291 kb on - strand, within BWI76_RS07140 at 1500.466 kb on + strand at 1500.539 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 1,498,161 + BWI76_RS07130 0.24 -0.2 1,498,161 + BWI76_RS07130 0.24 -1.3 1,498,193 + BWI76_RS07130 0.26 +1.1 1,498,209 + BWI76_RS07130 0.27 -1.7 1,498,214 + BWI76_RS07130 0.28 -0.3 1,498,214 + BWI76_RS07130 0.28 -1.7 1,498,214 + BWI76_RS07130 0.28 +0.8 1,498,214 + BWI76_RS07130 0.28 -0.5 1,498,222 - BWI76_RS07130 0.28 -0.3 1,498,222 - BWI76_RS07130 0.28 +0.9 1,498,222 - BWI76_RS07130 0.28 -0.4 1,498,227 + BWI76_RS07130 0.29 +0.4 1,498,228 + BWI76_RS07130 0.29 -0.3 1,498,228 - BWI76_RS07130 0.29 +0.2 1,498,236 - BWI76_RS07130 0.30 -0.8 1,498,236 - BWI76_RS07130 0.30 -0.6 1,498,282 + BWI76_RS07130 0.33 +2.0 1,498,283 + BWI76_RS07130 0.33 +0.9 1,498,291 - -0.0 1,498,296 - BWI76_RS07130 0.34 +0.2 1,498,346 - BWI76_RS07130 0.39 -1.5 1,498,347 - BWI76_RS07130 0.39 -1.2 1,498,360 - BWI76_RS07130 0.40 -1.5 1,498,363 + BWI76_RS07130 0.40 -0.2 1,498,365 + BWI76_RS07130 0.40 -1.0 1,498,393 - BWI76_RS07130 0.42 +1.0 1,498,432 + BWI76_RS07130 0.45 -1.9 1,498,432 + BWI76_RS07130 0.45 +0.1 1,498,440 - BWI76_RS07130 0.46 -2.5 1,498,440 - BWI76_RS07130 0.46 -0.5 1,498,449 + BWI76_RS07130 0.47 -2.5 1,498,449 + BWI76_RS07130 0.47 -0.4 1,498,450 - BWI76_RS07130 0.47 -0.4 1,498,450 - +0.7 1,498,451 + BWI76_RS07130 0.47 -0.8 1,498,457 - BWI76_RS07130 0.47 +0.8 1,498,459 - BWI76_RS07130 0.48 +0.0 1,498,459 - BWI76_RS07130 0.48 +0.1 1,498,459 - BWI76_RS07130 0.48 -0.9 1,498,463 - BWI76_RS07130 0.48 +0.1 1,498,464 + BWI76_RS07130 0.48 -1.6 1,498,464 + BWI76_RS07130 0.48 +0.2 1,498,465 + BWI76_RS07130 0.48 -0.3 1,498,473 - BWI76_RS07130 0.49 -1.2 1,498,473 - BWI76_RS07130 0.49 -0.1 1,498,473 - BWI76_RS07130 0.49 +1.5 1,498,473 - BWI76_RS07130 0.49 +0.3 1,498,473 - BWI76_RS07130 0.49 -0.0 1,498,473 - BWI76_RS07130 0.49 +2.5 1,498,475 + BWI76_RS07130 0.49 -0.0 1,498,475 + BWI76_RS07130 0.49 -0.5 1,498,475 + BWI76_RS07130 0.49 +0.9 1,498,475 + BWI76_RS07130 0.49 -0.3 1,498,475 + BWI76_RS07130 0.49 -1.1 1,498,483 - BWI76_RS07130 0.50 -0.0 1,498,483 - BWI76_RS07130 0.50 -0.5 1,498,483 - BWI76_RS07130 0.50 +0.2 1,498,498 + BWI76_RS07130 0.51 +0.4 1,498,562 - BWI76_RS07130 0.56 -0.3 1,498,607 - BWI76_RS07130 0.60 +1.0 1,498,615 - BWI76_RS07130 0.60 -0.8 1,498,696 - BWI76_RS07130 0.67 +0.1 1,498,696 - BWI76_RS07130 0.67 -0.2 1,498,749 + BWI76_RS07130 0.71 +1.2 1,498,756 + BWI76_RS07130 0.72 -0.5 1,498,771 + BWI76_RS07130 0.73 +0.3 1,498,771 + BWI76_RS07130 0.73 +0.3 1,498,778 - BWI76_RS07130 0.73 +3.0 1,498,832 + BWI76_RS07130 0.78 -0.9 1,498,850 + BWI76_RS07130 0.79 +0.1 1,498,850 + BWI76_RS07130 0.79 +0.0 1,498,850 + BWI76_RS07130 0.79 -0.3 1,498,912 + BWI76_RS07130 0.84 +0.1 1,498,920 - BWI76_RS07130 0.85 -2.5 1,498,968 - BWI76_RS07130 0.89 +1.0 1,498,993 + -1.2 1,498,998 + -2.0 1,499,006 - +0.5 1,499,142 - -0.4 1,499,160 + +2.0 1,499,167 + -1.5 1,499,209 + BWI76_RS07135 0.10 -1.1 1,499,209 + BWI76_RS07135 0.10 -1.5 1,499,215 + BWI76_RS07135 0.11 +0.4 1,499,228 + BWI76_RS07135 0.13 -0.3 1,499,236 - BWI76_RS07135 0.14 -0.0 1,499,236 - BWI76_RS07135 0.14 +0.4 1,499,293 + BWI76_RS07135 0.22 +0.1 1,499,293 + BWI76_RS07135 0.22 -1.0 1,499,293 + BWI76_RS07135 0.22 -0.2 1,499,300 + BWI76_RS07135 0.23 -0.0 1,499,301 - BWI76_RS07135 0.23 -0.8 1,499,305 + BWI76_RS07135 0.24 -1.0 1,499,305 + BWI76_RS07135 0.24 +0.1 1,499,308 - BWI76_RS07135 0.24 -3.0 1,499,308 - BWI76_RS07135 0.24 -1.3 1,499,313 - BWI76_RS07135 0.25 -1.2 1,499,318 + BWI76_RS07135 0.25 -0.3 1,499,318 + BWI76_RS07135 0.25 -1.3 1,499,318 + BWI76_RS07135 0.25 -0.7 1,499,318 + BWI76_RS07135 0.25 +0.6 1,499,326 - BWI76_RS07135 0.26 +0.4 1,499,326 - BWI76_RS07135 0.26 -0.2 1,499,326 - BWI76_RS07135 0.26 -2.6 1,499,332 + BWI76_RS07135 0.27 -1.0 1,499,332 + BWI76_RS07135 0.27 -0.0 1,499,361 + BWI76_RS07135 0.31 -1.9 1,499,361 + BWI76_RS07135 0.31 -0.6 1,499,361 + BWI76_RS07135 0.31 -0.8 1,499,361 + BWI76_RS07135 0.31 -1.0 1,499,369 - BWI76_RS07135 0.32 -0.1 1,499,371 + BWI76_RS07135 0.33 -0.6 1,499,371 - BWI76_RS07135 0.33 -0.3 1,499,389 + BWI76_RS07135 0.35 -0.0 1,499,389 + BWI76_RS07135 0.35 -0.9 1,499,397 - BWI76_RS07135 0.36 -0.6 1,499,420 + BWI76_RS07135 0.40 -0.2 1,499,428 - BWI76_RS07135 0.41 +1.1 1,499,455 + BWI76_RS07135 0.45 -1.3 1,499,551 + BWI76_RS07135 0.58 +0.7 1,499,647 + BWI76_RS07135 0.71 -1.3 1,499,786 + +1.0 1,499,806 - +0.4 1,499,808 + +0.2 1,499,808 + +1.0 1,499,808 + +0.3 1,499,808 + -0.6 1,499,808 + -1.3 1,499,808 + -1.3 1,499,808 + +1.1 1,499,808 + -0.5 1,499,808 + -0.3 1,499,808 + +0.0 1,499,808 + +1.5 1,499,808 + +0.3 1,499,816 - +0.2 1,499,818 + -0.5 1,499,818 + -0.5 1,499,818 + -0.5 1,499,818 + +0.7 1,499,823 + -1.7 1,499,823 + -0.3 1,499,831 + -0.1 1,499,837 + +0.8 1,499,837 + +0.8 1,499,888 + -0.1 1,499,888 + -0.2 1,499,902 + -0.3 1,499,906 + -0.3 1,499,944 - -0.0 1,499,944 - +0.4 1,499,944 - -0.3 1,499,995 - -0.9 1,500,000 + -0.5 1,500,000 - -0.5 1,500,000 - -0.0 1,500,000 - +0.3 1,500,000 - -0.4 1,500,000 - -0.6 1,500,047 - -0.3 1,500,047 - +0.2 1,500,047 - +0.5 1,500,078 - +0.1 1,500,078 - -1.1 1,500,097 - -0.4 1,500,099 - +0.2 1,500,099 - -0.5 1,500,185 - -0.2 1,500,193 - -1.1 1,500,281 - BWI76_RS07140 0.21 -0.3 1,500,291 - BWI76_RS07140 0.24 -0.3 1,500,466 + +1.0 1,500,539 - +1.0
Or see this region's nucleotide sequence