Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.670.1 and Xcc-8004.671.1 are separated by 414 nucleotides Xcc-8004.671.1 and Xcc-8004.672.1 are separated by 115 nucleotides Xcc-8004.672.1 and Xcc-8004.673.1 are separated by 285 nucleotides Xcc-8004.673.1 and Xcc-8004.674.1 are separated by 73 nucleotides
Xcc-8004.670.1: Xcc-8004.670.1 - ice nucleation protein, at 612,455 to 616,537
Xcc-8004.670.1
Xcc-8004.671.1: Xcc-8004.671.1 - DNA-binding protein Fis, at 616,952 to 617,224
Xcc-8004.671.1
Xcc-8004.672.1: Xcc-8004.672.1 - FIG01211636: hypothetical protein, at 617,340 to 618,629
Xcc-8004.672.1
Xcc-8004.673.1: Xcc-8004.673.1 - Transcriptional regulator pbsX family, at 618,915 to 619,367
Xcc-8004.673.1
Xcc-8004.674.1: Xcc-8004.674.1 - FIG01211343: hypothetical protein, at 619,441 to 619,935
Xcc-8004.674.1
Position (kb) 617
618
619 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 616.356 kb on - strand at 616.626 kb on + strand at 616.626 kb on + strand at 616.626 kb on + strand at 616.626 kb on + strand at 616.626 kb on + strand at 616.627 kb on - strand at 616.627 kb on - strand at 616.627 kb on - strand at 616.730 kb on - strand at 616.730 kb on - strand at 616.730 kb on - strand at 616.730 kb on - strand at 616.741 kb on + strand at 616.742 kb on - strand at 616.809 kb on + strand at 616.809 kb on + strand at 616.809 kb on + strand at 616.810 kb on - strand at 616.834 kb on + strand at 616.834 kb on + strand at 616.835 kb on - strand at 616.835 kb on - strand at 616.835 kb on - strand at 616.835 kb on - strand at 616.909 kb on + strand at 616.909 kb on + strand at 616.909 kb on + strand at 616.909 kb on + strand at 616.909 kb on + strand at 616.909 kb on + strand at 616.909 kb on + strand at 616.910 kb on - strand at 616.910 kb on - strand at 616.910 kb on - strand at 616.953 kb on + strand at 616.953 kb on + strand at 616.954 kb on - strand at 616.954 kb on - strand at 617.281 kb on + strand at 617.282 kb on - strand at 617.458 kb on + strand at 617.458 kb on + strand at 617.458 kb on + strand at 617.459 kb on - strand at 617.459 kb on - strand at 617.459 kb on - strand at 617.766 kb on + strand, within Xcc-8004.672.1 at 617.766 kb on + strand, within Xcc-8004.672.1 at 618.184 kb on - strand, within Xcc-8004.672.1 at 618.194 kb on + strand, within Xcc-8004.672.1 at 618.194 kb on + strand, within Xcc-8004.672.1 at 618.195 kb on - strand, within Xcc-8004.672.1 at 618.195 kb on - strand, within Xcc-8004.672.1 at 618.195 kb on - strand, within Xcc-8004.672.1 at 618.204 kb on + strand, within Xcc-8004.672.1 at 618.204 kb on + strand, within Xcc-8004.672.1 at 618.204 kb on + strand, within Xcc-8004.672.1 at 618.204 kb on + strand, within Xcc-8004.672.1 at 618.204 kb on + strand, within Xcc-8004.672.1 at 618.204 kb on + strand, within Xcc-8004.672.1 at 618.204 kb on + strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.450 kb on + strand, within Xcc-8004.672.1 at 618.451 kb on - strand, within Xcc-8004.672.1 at 618.451 kb on - strand, within Xcc-8004.672.1 at 618.451 kb on - strand, within Xcc-8004.672.1 at 618.513 kb on + strand at 618.514 kb on - strand at 618.514 kb on - strand at 618.514 kb on - strand at 618.514 kb on - strand at 618.514 kb on - strand at 618.656 kb on + strand at 618.657 kb on - strand at 618.798 kb on + strand at 618.847 kb on - strand at 618.847 kb on - strand at 618.911 kb on + strand at 618.911 kb on + strand at 618.912 kb on - strand at 618.912 kb on - strand at 618.912 kb on - strand at 619.037 kb on - strand, within Xcc-8004.673.1 at 619.108 kb on + strand, within Xcc-8004.673.1 at 619.109 kb on - strand, within Xcc-8004.673.1 at 619.109 kb on - strand, within Xcc-8004.673.1 at 619.109 kb on - strand, within Xcc-8004.673.1 at 619.109 kb on - strand, within Xcc-8004.673.1 at 619.109 kb on - strand, within Xcc-8004.673.1 at 619.269 kb on + strand, within Xcc-8004.673.1 at 619.269 kb on + strand, within Xcc-8004.673.1 at 619.269 kb on + strand, within Xcc-8004.673.1 at 619.270 kb on - strand, within Xcc-8004.673.1 at 619.270 kb on - strand, within Xcc-8004.673.1 at 619.270 kb on - strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.280 kb on - strand, within Xcc-8004.673.1 at 619.280 kb on - strand, within Xcc-8004.673.1 at 619.280 kb on - strand, within Xcc-8004.673.1 at 619.280 kb on - strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.282 kb on - strand, within Xcc-8004.673.1 at 619.282 kb on - strand, within Xcc-8004.673.1 at 619.282 kb on - strand, within Xcc-8004.673.1 at 619.282 kb on - strand, within Xcc-8004.673.1 at 619.325 kb on + strand at 619.325 kb on + strand at 619.325 kb on + strand at 619.325 kb on + strand at 619.325 kb on + strand at 619.325 kb on + strand at 619.325 kb on + strand at 619.326 kb on - strand at 619.326 kb on - strand at 619.326 kb on - strand at 619.326 kb on - strand at 619.326 kb on - strand at 619.326 kb on - strand at 619.327 kb on + strand at 619.327 kb on + strand at 619.327 kb on + strand at 619.327 kb on + strand at 619.327 kb on + strand at 619.328 kb on - strand at 619.328 kb on - strand at 619.328 kb on - strand at 619.328 kb on - strand at 619.349 kb on + strand at 619.349 kb on + strand at 619.350 kb on - strand at 619.350 kb on - strand at 619.350 kb on - strand at 619.356 kb on + strand at 619.357 kb on - strand at 619.357 kb on - strand at 619.357 kb on - strand at 619.357 kb on - strand at 619.386 kb on + strand at 619.514 kb on - strand, within Xcc-8004.674.1 at 619.561 kb on + strand, within Xcc-8004.674.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 616,356 - +0.4 616,626 + +0.0 616,626 + +0.4 616,626 + -1.3 616,626 + -1.2 616,626 + -0.6 616,627 - -0.4 616,627 - -1.3 616,627 - +2.3 616,730 - +0.7 616,730 - -2.3 616,730 - -3.8 616,730 - -3.0 616,741 + +7.6 616,742 - +0.8 616,809 + +1.5 616,809 + +0.5 616,809 + +1.6 616,810 - -2.0 616,834 + +2.8 616,834 + +0.6 616,835 - -1.7 616,835 - -0.6 616,835 - +1.0 616,835 - -3.3 616,909 + +2.2 616,909 + +0.7 616,909 + -0.0 616,909 + -0.4 616,909 + +1.0 616,909 + +0.2 616,909 + -0.6 616,910 - -3.0 616,910 - -0.6 616,910 - +1.5 616,953 + -0.8 616,953 + -0.2 616,954 - -0.0 616,954 - -2.0 617,281 + -1.8 617,282 - +0.2 617,458 + -3.6 617,458 + -1.7 617,458 + -1.5 617,459 - -2.9 617,459 - -0.2 617,459 - -3.0 617,766 + Xcc-8004.672.1 0.33 +0.5 617,766 + Xcc-8004.672.1 0.33 -0.8 618,184 - Xcc-8004.672.1 0.65 +1.7 618,194 + Xcc-8004.672.1 0.66 +0.7 618,194 + Xcc-8004.672.1 0.66 -0.7 618,195 - Xcc-8004.672.1 0.66 -0.2 618,195 - Xcc-8004.672.1 0.66 +6.2 618,195 - Xcc-8004.672.1 0.66 +1.1 618,204 + Xcc-8004.672.1 0.67 -3.1 618,204 + Xcc-8004.672.1 0.67 -0.3 618,204 + Xcc-8004.672.1 0.67 +0.7 618,204 + Xcc-8004.672.1 0.67 -0.7 618,204 + Xcc-8004.672.1 0.67 +1.8 618,204 + Xcc-8004.672.1 0.67 +0.2 618,204 + Xcc-8004.672.1 0.67 +1.1 618,205 - Xcc-8004.672.1 0.67 +1.0 618,205 - Xcc-8004.672.1 0.67 +1.5 618,205 - Xcc-8004.672.1 0.67 +0.6 618,205 - Xcc-8004.672.1 0.67 -3.5 618,205 - Xcc-8004.672.1 0.67 -1.4 618,205 - Xcc-8004.672.1 0.67 -0.8 618,205 - Xcc-8004.672.1 0.67 +2.0 618,205 - Xcc-8004.672.1 0.67 -3.7 618,205 - Xcc-8004.672.1 0.67 +4.1 618,205 - Xcc-8004.672.1 0.67 -1.1 618,450 + Xcc-8004.672.1 0.86 -0.6 618,451 - Xcc-8004.672.1 0.86 +0.4 618,451 - Xcc-8004.672.1 0.86 -0.7 618,451 - Xcc-8004.672.1 0.86 +0.7 618,513 + +0.3 618,514 - -1.5 618,514 - +1.5 618,514 - -0.5 618,514 - -1.8 618,514 - +1.7 618,656 + -2.1 618,657 - -1.0 618,798 + +2.5 618,847 - -0.2 618,847 - -0.2 618,911 + -1.1 618,911 + -1.5 618,912 - +0.0 618,912 - -0.6 618,912 - -0.1 619,037 - Xcc-8004.673.1 0.27 -0.3 619,108 + Xcc-8004.673.1 0.43 -1.5 619,109 - Xcc-8004.673.1 0.43 +1.1 619,109 - Xcc-8004.673.1 0.43 +0.7 619,109 - Xcc-8004.673.1 0.43 +3.0 619,109 - Xcc-8004.673.1 0.43 +0.3 619,109 - Xcc-8004.673.1 0.43 +1.7 619,269 + Xcc-8004.673.1 0.78 -2.9 619,269 + Xcc-8004.673.1 0.78 +0.5 619,269 + Xcc-8004.673.1 0.78 +0.5 619,270 - Xcc-8004.673.1 0.78 +0.5 619,270 - Xcc-8004.673.1 0.78 -0.3 619,270 - Xcc-8004.673.1 0.78 +1.4 619,279 + Xcc-8004.673.1 0.80 +0.0 619,279 + Xcc-8004.673.1 0.80 -0.0 619,279 + Xcc-8004.673.1 0.80 -2.8 619,279 + Xcc-8004.673.1 0.80 +1.2 619,279 + Xcc-8004.673.1 0.80 -0.2 619,279 + Xcc-8004.673.1 0.80 -0.0 619,279 + Xcc-8004.673.1 0.80 -1.9 619,279 + Xcc-8004.673.1 0.80 -3.0 619,280 - Xcc-8004.673.1 0.81 +1.1 619,280 - Xcc-8004.673.1 0.81 -0.0 619,280 - Xcc-8004.673.1 0.81 -1.7 619,280 - Xcc-8004.673.1 0.81 -1.5 619,281 + Xcc-8004.673.1 0.81 -3.0 619,281 + Xcc-8004.673.1 0.81 +0.2 619,281 + Xcc-8004.673.1 0.81 -1.0 619,281 + Xcc-8004.673.1 0.81 +0.8 619,281 + Xcc-8004.673.1 0.81 -0.5 619,281 + Xcc-8004.673.1 0.81 -0.5 619,281 + Xcc-8004.673.1 0.81 +0.0 619,281 + Xcc-8004.673.1 0.81 +0.2 619,281 + Xcc-8004.673.1 0.81 +0.9 619,281 + Xcc-8004.673.1 0.81 +0.3 619,281 + Xcc-8004.673.1 0.81 -3.2 619,281 + Xcc-8004.673.1 0.81 -3.1 619,282 - Xcc-8004.673.1 0.81 -0.7 619,282 - Xcc-8004.673.1 0.81 -3.3 619,282 - Xcc-8004.673.1 0.81 -1.0 619,282 - Xcc-8004.673.1 0.81 -0.9 619,325 + +1.2 619,325 + +0.4 619,325 + +0.8 619,325 + -0.3 619,325 + -2.0 619,325 + -3.0 619,325 + -0.7 619,326 - +0.3 619,326 - -2.5 619,326 - +0.0 619,326 - -1.9 619,326 - -0.1 619,326 - -1.1 619,327 + -1.9 619,327 + +0.4 619,327 + +0.7 619,327 + +0.9 619,327 + -0.1 619,328 - -1.2 619,328 - -0.9 619,328 - +1.1 619,328 - -0.5 619,349 + -1.5 619,349 + -0.9 619,350 - -3.1 619,350 - -4.1 619,350 - +0.3 619,356 + +1.6 619,357 - -2.0 619,357 - +0.8 619,357 - -2.9 619,357 - +0.9 619,386 + +0.5 619,514 - Xcc-8004.674.1 0.15 -0.6 619,561 + Xcc-8004.674.1 0.24 -1.5
Or see this region's nucleotide sequence