Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3374

Experiment: KB with Palmatine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3372 and Psyr_3373 are separated by 74 nucleotidesPsyr_3373 and Psyr_3374 are separated by 170 nucleotidesPsyr_3374 and Psyr_3375 overlap by 22 nucleotides Psyr_3372: Psyr_3372 - conserved hypothetical protein, at 4,031,471 to 4,032,091 _3372 Psyr_3373: Psyr_3373 - conserved hypothetical protein, at 4,032,166 to 4,032,771 _3373 Psyr_3374: Psyr_3374 - Heavy metal response regulator, at 4,032,942 to 4,033,631 _3374 Psyr_3375: Psyr_3375 - Heavy metal sensor kinase, at 4,033,610 to 4,034,998 _3375 Position (kb) 4032 4033 4034Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4031.994 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.020 kb on - strand, within Psyr_3372at 4032.020 kb on - strand, within Psyr_3372at 4032.152 kb on - strandat 4032.152 kb on - strandat 4032.152 kb on - strandat 4032.167 kb on + strandat 4032.167 kb on + strandat 4032.168 kb on - strandat 4032.168 kb on - strandat 4032.168 kb on - strandat 4032.168 kb on - strandat 4032.168 kb on - strandat 4032.168 kb on - strandat 4032.341 kb on + strand, within Psyr_3373at 4032.341 kb on + strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.437 kb on + strand, within Psyr_3373at 4032.438 kb on - strand, within Psyr_3373at 4032.750 kb on + strandat 4032.751 kb on - strandat 4032.751 kb on - strandat 4032.751 kb on - strandat 4032.751 kb on - strandat 4032.753 kb on + strandat 4032.754 kb on - strandat 4032.754 kb on - strandat 4032.829 kb on + strandat 4032.829 kb on + strandat 4032.830 kb on - strandat 4032.830 kb on - strandat 4032.830 kb on - strandat 4032.830 kb on - strandat 4032.947 kb on + strandat 4032.955 kb on + strandat 4032.956 kb on - strandat 4033.420 kb on + strand, within Psyr_3374at 4033.441 kb on + strand, within Psyr_3374at 4033.441 kb on + strand, within Psyr_3374at 4033.442 kb on - strand, within Psyr_3374at 4033.591 kb on - strandat 4033.591 kb on - strandat 4033.694 kb on + strandat 4033.694 kb on + strandat 4033.694 kb on + strandat 4033.701 kb on - strandat 4034.110 kb on + strand, within Psyr_3375at 4034.110 kb on + strand, within Psyr_3375at 4034.110 kb on + strand, within Psyr_3375at 4034.110 kb on + strand, within Psyr_3375at 4034.111 kb on - strand, within Psyr_3375at 4034.111 kb on - strand, within Psyr_3375at 4034.111 kb on - strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.116 kb on + strand, within Psyr_3375at 4034.116 kb on + strand, within Psyr_3375at 4034.117 kb on - strand, within Psyr_3375at 4034.117 kb on - strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.159 kb on + strand, within Psyr_3375at 4034.160 kb on - strand, within Psyr_3375at 4034.160 kb on - strand, within Psyr_3375at 4034.261 kb on - strand, within Psyr_3375at 4034.441 kb on + strand, within Psyr_3375at 4034.441 kb on + strand, within Psyr_3375at 4034.595 kb on - strand, within Psyr_3375

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine 10 mM
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4,031,994 + Psyr_3372 0.84 -0.9
4,032,019 + Psyr_3372 0.88 +0.5
4,032,019 + Psyr_3372 0.88 +2.4
4,032,019 + Psyr_3372 0.88 -2.8
4,032,019 + Psyr_3372 0.88 +2.8
4,032,020 - Psyr_3372 0.88 -3.3
4,032,020 - Psyr_3372 0.88 -4.3
4,032,152 - -1.6
4,032,152 - +0.7
4,032,152 - -0.4
4,032,167 + -0.0
4,032,167 + +0.6
4,032,168 - +1.0
4,032,168 - +0.1
4,032,168 - +1.2
4,032,168 - -1.6
4,032,168 - -0.3
4,032,168 - +0.0
4,032,341 + Psyr_3373 0.29 -0.3
4,032,341 + Psyr_3373 0.29 -1.3
4,032,342 - Psyr_3373 0.29 +0.1
4,032,342 - Psyr_3373 0.29 +0.2
4,032,342 - Psyr_3373 0.29 -0.2
4,032,342 - Psyr_3373 0.29 +1.2
4,032,342 - Psyr_3373 0.29 -0.1
4,032,342 - Psyr_3373 0.29 +2.1
4,032,437 + Psyr_3373 0.45 -4.1
4,032,438 - Psyr_3373 0.45 -2.2
4,032,750 + -2.8
4,032,751 - -0.3
4,032,751 - +3.8
4,032,751 - -0.5
4,032,751 - +0.0
4,032,753 + +1.0
4,032,754 - -0.3
4,032,754 - -1.2
4,032,829 + +1.2
4,032,829 + -1.4
4,032,830 - +1.8
4,032,830 - +0.6
4,032,830 - -1.4
4,032,830 - -0.9
4,032,947 + -0.1
4,032,955 + +1.0
4,032,956 - +1.1
4,033,420 + Psyr_3374 0.69 +0.9
4,033,441 + Psyr_3374 0.72 -1.0
4,033,441 + Psyr_3374 0.72 -1.0
4,033,442 - Psyr_3374 0.72 -0.2
4,033,591 - -1.6
4,033,591 - +0.2
4,033,694 + -1.4
4,033,694 + -0.0
4,033,694 + -1.3
4,033,701 - -0.4
4,034,110 + Psyr_3375 0.36 +4.0
4,034,110 + Psyr_3375 0.36 +0.9
4,034,110 + Psyr_3375 0.36 -1.2
4,034,110 + Psyr_3375 0.36 -1.3
4,034,111 - Psyr_3375 0.36 +0.6
4,034,111 - Psyr_3375 0.36 +1.2
4,034,111 - Psyr_3375 0.36 -1.2
4,034,114 + Psyr_3375 0.36 +1.0
4,034,114 + Psyr_3375 0.36 -0.2
4,034,114 + Psyr_3375 0.36 -1.0
4,034,114 + Psyr_3375 0.36 -0.0
4,034,114 + Psyr_3375 0.36 +4.0
4,034,114 + Psyr_3375 0.36 -0.4
4,034,114 + Psyr_3375 0.36 -0.4
4,034,114 + Psyr_3375 0.36 +1.2
4,034,114 + Psyr_3375 0.36 +0.3
4,034,114 + Psyr_3375 0.36 -1.3
4,034,114 + Psyr_3375 0.36 +1.1
4,034,114 + Psyr_3375 0.36 +1.8
4,034,114 + Psyr_3375 0.36 +0.2
4,034,114 + Psyr_3375 0.36 -2.3
4,034,114 + Psyr_3375 0.36 +2.2
4,034,115 - Psyr_3375 0.36 -0.3
4,034,115 - Psyr_3375 0.36 +0.7
4,034,115 - Psyr_3375 0.36 -0.4
4,034,115 - Psyr_3375 0.36 -1.1
4,034,115 - Psyr_3375 0.36 -2.4
4,034,115 - Psyr_3375 0.36 +0.3
4,034,115 - Psyr_3375 0.36 -1.6
4,034,115 - Psyr_3375 0.36 +1.6
4,034,115 - Psyr_3375 0.36 -1.4
4,034,115 - Psyr_3375 0.36 -0.7
4,034,115 - Psyr_3375 0.36 -0.4
4,034,115 - Psyr_3375 0.36 -3.3
4,034,115 - Psyr_3375 0.36 -1.7
4,034,115 - Psyr_3375 0.36 -2.2
4,034,116 + Psyr_3375 0.36 +0.1
4,034,116 + Psyr_3375 0.36 -1.2
4,034,117 - Psyr_3375 0.37 +1.5
4,034,117 - Psyr_3375 0.37 +0.6
4,034,118 + Psyr_3375 0.37 -1.1
4,034,118 + Psyr_3375 0.37 +0.6
4,034,118 + Psyr_3375 0.37 -0.5
4,034,118 + Psyr_3375 0.37 +1.1
4,034,118 + Psyr_3375 0.37 -0.1
4,034,118 + Psyr_3375 0.37 +1.3
4,034,118 + Psyr_3375 0.37 -3.0
4,034,118 + Psyr_3375 0.37 +1.3
4,034,118 + Psyr_3375 0.37 +0.3
4,034,118 + Psyr_3375 0.37 +0.8
4,034,118 + Psyr_3375 0.37 +0.7
4,034,118 + Psyr_3375 0.37 -0.5
4,034,118 + Psyr_3375 0.37 -1.1
4,034,118 + Psyr_3375 0.37 -2.5
4,034,118 + Psyr_3375 0.37 +0.0
4,034,118 + Psyr_3375 0.37 -0.1
4,034,118 + Psyr_3375 0.37 -2.3
4,034,118 + Psyr_3375 0.37 -0.8
4,034,118 + Psyr_3375 0.37 -3.5
4,034,118 + Psyr_3375 0.37 +1.2
4,034,118 + Psyr_3375 0.37 -0.5
4,034,118 + Psyr_3375 0.37 +0.6
4,034,118 + Psyr_3375 0.37 -2.6
4,034,119 - Psyr_3375 0.37 +1.1
4,034,119 - Psyr_3375 0.37 -1.3
4,034,119 - Psyr_3375 0.37 -0.4
4,034,119 - Psyr_3375 0.37 -0.4
4,034,119 - Psyr_3375 0.37 +0.4
4,034,119 - Psyr_3375 0.37 +0.2
4,034,119 - Psyr_3375 0.37 -2.0
4,034,119 - Psyr_3375 0.37 -0.5
4,034,119 - Psyr_3375 0.37 -0.2
4,034,119 - Psyr_3375 0.37 +0.5
4,034,119 - Psyr_3375 0.37 +3.5
4,034,119 - Psyr_3375 0.37 -0.0
4,034,119 - Psyr_3375 0.37 +1.3
4,034,119 - Psyr_3375 0.37 +1.2
4,034,119 - Psyr_3375 0.37 -0.4
4,034,119 - Psyr_3375 0.37 +0.8
4,034,119 - Psyr_3375 0.37 -2.3
4,034,119 - Psyr_3375 0.37 -0.3
4,034,119 - Psyr_3375 0.37 -2.2
4,034,159 + Psyr_3375 0.40 -0.6
4,034,160 - Psyr_3375 0.40 -1.4
4,034,160 - Psyr_3375 0.40 -0.2
4,034,261 - Psyr_3375 0.47 +0.6
4,034,441 + Psyr_3375 0.60 -0.7
4,034,441 + Psyr_3375 0.60 +0.2
4,034,595 - Psyr_3375 0.71 -0.9

Or see this region's nucleotide sequence