Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2114.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
2,023,472	+		Xcc-8004.2112.1	0.28	-0.7
2,023,473	-		Xcc-8004.2112.1	0.28	+0.4
2,023,473	-		Xcc-8004.2112.1	0.28	+0.1
2,023,473	-		Xcc-8004.2112.1	0.28	-0.8
2,023,653	+		Xcc-8004.2112.1	0.49	+0.5
2,023,653	+		Xcc-8004.2112.1	0.49	-0.4
2,023,654	-		Xcc-8004.2112.1	0.50	-0.7
2,023,654	-		Xcc-8004.2112.1	0.50	-0.5
2,023,654	-		Xcc-8004.2112.1	0.50	-0.5
2,023,654	-		Xcc-8004.2112.1	0.50	-0.7
2,023,662	+		Xcc-8004.2112.1	0.50	+1.4
2,023,662	+		Xcc-8004.2112.1	0.50	-0.2
2,023,662	+		Xcc-8004.2112.1	0.50	-2.0
2,023,663	-		Xcc-8004.2112.1	0.51	+0.1
2,023,663	-		Xcc-8004.2112.1	0.51	-0.2
2,023,663	-		Xcc-8004.2112.1	0.51	-1.8
2,023,773	+		Xcc-8004.2112.1	0.63	+0.8
2,023,773	+		Xcc-8004.2112.1	0.63	-0.3
2,023,773	+		Xcc-8004.2112.1	0.63	-0.2
2,023,773	+		Xcc-8004.2112.1	0.63	-0.7
2,023,774	-		Xcc-8004.2112.1	0.64	+0.1
2,023,774	-		Xcc-8004.2112.1	0.64	+0.3
2,023,941	+		Xcc-8004.2112.1	0.83	+0.5
2,023,941	+		Xcc-8004.2112.1	0.83	-0.2
2,023,941	+		Xcc-8004.2112.1	0.83	-1.6
2,023,941	+		Xcc-8004.2112.1	0.83	+0.1
2,023,941	+		Xcc-8004.2112.1	0.83	-0.3
2,023,942	-		Xcc-8004.2112.1	0.83	+0.5
2,023,942	-		Xcc-8004.2112.1	0.83	-0.8
2,023,977	+		Xcc-8004.2112.1	0.87	+0.8
2,023,977	+		Xcc-8004.2112.1	0.87	+0.8
2,023,977	+		Xcc-8004.2112.1	0.87	-0.5
2,023,977	+		Xcc-8004.2112.1	0.87	-1.5
2,023,978	-		Xcc-8004.2112.1	0.87	+0.9
2,023,978	-		Xcc-8004.2112.1	0.87	+0.7
2,023,978	-		Xcc-8004.2112.1	0.87	-0.6
2,023,978	-		Xcc-8004.2112.1	0.87	-0.1
2,024,031	+				+2.9
2,024,031	+				-0.2
2,024,031	+				-0.8
2,024,031	+				+0.3
2,024,032	-				+0.4
2,024,037	+				+0.6
2,024,038	-				+0.9
2,024,038	-				-0.2
2,024,109	+				-1.1
2,024,110	-				-3.2
2,024,174	+		Xcc-8004.2113.1	0.31	-2.6
2,024,540	+				-3.6
2,024,540	+				-3.0
2,024,540	+				-0.6
2,024,540	+				+0.2
2,024,540	+				+1.6
2,024,540	+				-1.5
2,024,540	+				-0.5
2,024,540	+				-1.9
2,024,540	+				+1.1
2,024,541	-				-1.0
2,024,541	-				-0.6
2,024,541	-				-1.7
2,024,541	-				-1.0
2,024,650	+				+0.4
2,024,651	-				-1.3
2,024,757	+		Xcc-8004.2114.1	0.12	-0.8
2,024,758	-		Xcc-8004.2114.1	0.12	+0.4
2,024,758	-		Xcc-8004.2114.1	0.12	-1.4
2,024,769	+		Xcc-8004.2114.1	0.12	+0.4
2,024,769	+		Xcc-8004.2114.1	0.12	-1.3
2,024,769	+		Xcc-8004.2114.1	0.12	+0.1
2,024,769	+		Xcc-8004.2114.1	0.12	-0.2
2,024,769	+		Xcc-8004.2114.1	0.12	-1.2
2,024,769	+		Xcc-8004.2114.1	0.12	+1.9
2,024,769	+		Xcc-8004.2114.1	0.12	+2.8
2,024,769	+		Xcc-8004.2114.1	0.12	+0.3
2,024,769	+		Xcc-8004.2114.1	0.12	+0.0
2,024,769	+		Xcc-8004.2114.1	0.12	+0.4
2,024,770	-		Xcc-8004.2114.1	0.12	-0.2
2,024,770	-		Xcc-8004.2114.1	0.12	-0.6
2,024,770	-		Xcc-8004.2114.1	0.12	-0.3
2,024,770	-		Xcc-8004.2114.1	0.12	+0.5
2,024,770	-		Xcc-8004.2114.1	0.12	+0.4
2,024,770	-		Xcc-8004.2114.1	0.12	-0.3
2,024,770	-		Xcc-8004.2114.1	0.12	+0.4
2,024,770	-		Xcc-8004.2114.1	0.12	-2.0
2,024,770	-		Xcc-8004.2114.1	0.12	-0.2
2,024,770	-		Xcc-8004.2114.1	0.12	-0.1
2,024,770	-		Xcc-8004.2114.1	0.12	+0.5
2,024,771	+		Xcc-8004.2114.1	0.12	-0.4
2,024,771	+		Xcc-8004.2114.1	0.12	-1.1
2,024,949	+		Xcc-8004.2114.1	0.18	-0.1
2,024,949	+		Xcc-8004.2114.1	0.18	-0.1
2,024,950	-		Xcc-8004.2114.1	0.18	-2.5
2,025,160	-		Xcc-8004.2114.1	0.25	-0.1
2,025,160	-		Xcc-8004.2114.1	0.25	+1.2
2,025,160	-		Xcc-8004.2114.1	0.25	+1.0
2,025,160	-		Xcc-8004.2114.1	0.25	-1.5
2,025,160	-		Xcc-8004.2114.1	0.25	+0.2
2,025,163	+		Xcc-8004.2114.1	0.25	-0.7
2,025,164	-		Xcc-8004.2114.1	0.25	+1.0
2,025,164	-		Xcc-8004.2114.1	0.25	-2.2
2,025,240	+		Xcc-8004.2114.1	0.28	-0.6
2,025,240	+		Xcc-8004.2114.1	0.28	-1.2
2,025,241	-		Xcc-8004.2114.1	0.28	-2.2
2,025,241	-		Xcc-8004.2114.1	0.28	-1.6
2,025,241	-		Xcc-8004.2114.1	0.28	-1.9
2,025,261	+		Xcc-8004.2114.1	0.28	+1.8
2,025,261	+		Xcc-8004.2114.1	0.28	+1.3
2,025,262	-		Xcc-8004.2114.1	0.28	-1.4
2,025,262	-		Xcc-8004.2114.1	0.28	-0.4
2,025,262	-		Xcc-8004.2114.1	0.28	+1.8
2,025,262	-		Xcc-8004.2114.1	0.28	-2.8
2,025,354	+		Xcc-8004.2114.1	0.32	+0.4
2,025,354	+		Xcc-8004.2114.1	0.32	-1.2
2,025,355	-		Xcc-8004.2114.1	0.32	-1.3
2,025,661	-		Xcc-8004.2114.1	0.42	+0.6
2,025,730	-		Xcc-8004.2114.1	0.44	-0.6
2,025,903	-		Xcc-8004.2114.1	0.50	+0.6
2,025,903	-		Xcc-8004.2114.1	0.50	+0.7
2,025,903	-		Xcc-8004.2114.1	0.50	+0.2
2,025,990	+		Xcc-8004.2114.1	0.53	+0.3
2,025,990	+		Xcc-8004.2114.1	0.53	-1.0
2,025,997	+		Xcc-8004.2114.1	0.53	-1.8
2,025,998	-		Xcc-8004.2114.1	0.53	-0.4
2,026,024	+		Xcc-8004.2114.1	0.54	+1.6
2,026,024	+		Xcc-8004.2114.1	0.54	-0.5
2,026,024	+		Xcc-8004.2114.1	0.54	-1.5
2,026,024	+		Xcc-8004.2114.1	0.54	-1.4
2,026,024	+		Xcc-8004.2114.1	0.54	+0.4
2,026,025	-		Xcc-8004.2114.1	0.54	-0.9
2,026,025	-		Xcc-8004.2114.1	0.54	+1.4
2,026,025	-		Xcc-8004.2114.1	0.54	-0.1
2,026,025	-		Xcc-8004.2114.1	0.54	-0.1
2,026,025	-		Xcc-8004.2114.1	0.54	-0.1
2,026,025	-		Xcc-8004.2114.1	0.54	-1.8
2,026,025	-		Xcc-8004.2114.1	0.54	-2.2
2,026,087	+		Xcc-8004.2114.1	0.56	-0.6
2,026,088	-		Xcc-8004.2114.1	0.56	-0.7
2,026,088	-		Xcc-8004.2114.1	0.56	+0.1
2,026,149	+		Xcc-8004.2114.1	0.58	-0.2
2,026,149	+		Xcc-8004.2114.1	0.58	-1.6
2,026,150	-		Xcc-8004.2114.1	0.58	+0.8
2,026,419	+		Xcc-8004.2114.1	0.67	+1.2
2,026,419	+		Xcc-8004.2114.1	0.67	+0.8
2,026,419	+		Xcc-8004.2114.1	0.67	+1.1
2,026,419	+		Xcc-8004.2114.1	0.67	+0.9
2,026,420	-		Xcc-8004.2114.1	0.67	+2.0
2,026,420	-		Xcc-8004.2114.1	0.67	+0.1
2,026,420	-		Xcc-8004.2114.1	0.67	-1.8
2,026,420	-		Xcc-8004.2114.1	0.67	+1.6
2,026,420	-		Xcc-8004.2114.1	0.67	-1.2
2,026,420	-		Xcc-8004.2114.1	0.67	-1.1
2,026,420	-		Xcc-8004.2114.1	0.67	-1.1
2,026,721	+		Xcc-8004.2114.1	0.77	-0.4
2,026,721	+		Xcc-8004.2114.1	0.77	+0.6
2,026,721	+		Xcc-8004.2114.1	0.77	+0.9
2,026,722	-		Xcc-8004.2114.1	0.77	+0.3
2,026,774	-		Xcc-8004.2114.1	0.79	+0.2
2,027,127	+				-0.8
2,027,128	-				-2.0
2,027,128	-				-1.7
2,027,295	-				+0.2
2,027,412	+				-1.6
2,027,412	+				-1.3
2,027,413	-				-2.5
2,027,478	+				-0.4
2,027,478	+				-0.4
2,027,478	+				+0.7
2,027,478	+				-2.6
2,027,516	+				+0.6
2,027,516	+				+0.4
2,027,516	+				-1.0
2,027,516	+				-0.9
2,027,517	-				-0.0
2,027,517	-				-0.1
2,027,517	-				-0.4
2,027,517	-				+0.6
2,027,517	-				+2.5
2,027,846	+				-0.1
2,027,846	+				+0.1
2,027,847	-				+0.5
2,027,954	+				-1.3
2,027,955	-				-1.1
2,027,955	-				+0.8
2,028,025	-				+0.6
2,028,169	+		Xcc-8004.2116.1	0.19	-0.5
2,028,169	+		Xcc-8004.2116.1	0.19	-0.4
2,028,169	+		Xcc-8004.2116.1	0.19	-0.1
2,028,170	-		Xcc-8004.2116.1	0.19	+0.1
2,028,170	-		Xcc-8004.2116.1	0.19	+0.9
2,028,170	-		Xcc-8004.2116.1	0.19	+0.5
2,028,170	-		Xcc-8004.2116.1	0.19	+1.8
2,028,170	-		Xcc-8004.2116.1	0.19	+1.6
2,028,221	+		Xcc-8004.2116.1	0.27	+1.5
2,028,222	-		Xcc-8004.2116.1	0.27	-1.5
2,028,303	+		Xcc-8004.2116.1	0.40	+1.1
2,028,303	+		Xcc-8004.2116.1	0.40	-2.3
2,028,303	+		Xcc-8004.2116.1	0.40	+0.1