Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4336.1 and Xcc-8004.4337.1 are separated by 32 nucleotides Xcc-8004.4337.1 and Xcc-8004.4338.1 are separated by 240 nucleotides Xcc-8004.4338.1 and Xcc-8004.4339.1 overlap by 14 nucleotides Xcc-8004.4339.1 and Xcc-8004.4340.1 overlap by 4 nucleotides
Xcc-8004.4336.1: Xcc-8004.4336.1 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 4,153,824 to 4,154,681
Xcc-8004.4336.1
Xcc-8004.4337.1: Xcc-8004.4337.1 - FIG01210643: hypothetical protein, at 4,154,714 to 4,155,433
Xcc-8004.4337.1
Xcc-8004.4338.1: Xcc-8004.4338.1 - hypothetical protein, at 4,155,674 to 4,155,784
Xcc-8004.4338.1
Xcc-8004.4339.1: Xcc-8004.4339.1 - FIG01211792: hypothetical protein, at 4,155,771 to 4,156,208
Xcc-8004.4339.1
Xcc-8004.4340.1: Xcc-8004.4340.1 - Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein, at 4,156,205 to 4,157,113
Xcc-8004.4340.1
Position (kb) 4155
4156 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4154.811 kb on + strand, within Xcc-8004.4337.1 at 4154.812 kb on - strand, within Xcc-8004.4337.1 at 4154.819 kb on + strand, within Xcc-8004.4337.1 at 4154.820 kb on - strand, within Xcc-8004.4337.1 at 4154.964 kb on + strand, within Xcc-8004.4337.1 at 4154.965 kb on - strand, within Xcc-8004.4337.1 at 4155.020 kb on + strand, within Xcc-8004.4337.1 at 4155.021 kb on - strand, within Xcc-8004.4337.1 at 4155.021 kb on - strand, within Xcc-8004.4337.1 at 4155.021 kb on - strand, within Xcc-8004.4337.1 at 4155.021 kb on - strand, within Xcc-8004.4337.1 at 4155.021 kb on - strand, within Xcc-8004.4337.1 at 4155.113 kb on + strand, within Xcc-8004.4337.1 at 4155.113 kb on + strand, within Xcc-8004.4337.1 at 4155.114 kb on - strand, within Xcc-8004.4337.1 at 4155.114 kb on - strand, within Xcc-8004.4337.1 at 4155.210 kb on - strand, within Xcc-8004.4337.1 at 4155.210 kb on - strand, within Xcc-8004.4337.1 at 4155.210 kb on - strand, within Xcc-8004.4337.1 at 4155.407 kb on + strand at 4155.407 kb on + strand at 4155.408 kb on - strand at 4155.408 kb on - strand at 4155.408 kb on - strand at 4155.432 kb on - strand at 4155.432 kb on - strand at 4155.432 kb on - strand at 4155.432 kb on - strand at 4155.511 kb on + strand at 4155.675 kb on + strand at 4155.728 kb on + strand, within Xcc-8004.4338.1 at 4155.728 kb on + strand, within Xcc-8004.4338.1 at 4155.729 kb on - strand, within Xcc-8004.4338.1 at 4155.729 kb on - strand, within Xcc-8004.4338.1 at 4155.729 kb on - strand, within Xcc-8004.4338.1 at 4155.729 kb on - strand, within Xcc-8004.4338.1 at 4155.729 kb on - strand, within Xcc-8004.4338.1 at 4155.729 kb on - strand, within Xcc-8004.4338.1 at 4155.729 kb on - strand, within Xcc-8004.4338.1 at 4155.729 kb on - strand, within Xcc-8004.4338.1 at 4155.768 kb on + strand, within Xcc-8004.4338.1 at 4155.769 kb on - strand, within Xcc-8004.4338.1 at 4155.769 kb on - strand, within Xcc-8004.4338.1 at 4155.769 kb on - strand, within Xcc-8004.4338.1 at 4156.007 kb on - strand, within Xcc-8004.4339.1 at 4156.007 kb on - strand, within Xcc-8004.4339.1 at 4156.019 kb on - strand, within Xcc-8004.4339.1 at 4156.019 kb on - strand, within Xcc-8004.4339.1 at 4156.080 kb on - strand, within Xcc-8004.4339.1 at 4156.300 kb on - strand, within Xcc-8004.4340.1 at 4156.746 kb on + strand, within Xcc-8004.4340.1 at 4156.746 kb on + strand, within Xcc-8004.4340.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 4,154,811 + Xcc-8004.4337.1 0.13 +1.3 4,154,812 - Xcc-8004.4337.1 0.14 -0.2 4,154,819 + Xcc-8004.4337.1 0.15 +2.5 4,154,820 - Xcc-8004.4337.1 0.15 -0.4 4,154,964 + Xcc-8004.4337.1 0.35 -2.1 4,154,965 - Xcc-8004.4337.1 0.35 +1.5 4,155,020 + Xcc-8004.4337.1 0.42 -1.4 4,155,021 - Xcc-8004.4337.1 0.43 +0.1 4,155,021 - Xcc-8004.4337.1 0.43 -0.2 4,155,021 - Xcc-8004.4337.1 0.43 +0.9 4,155,021 - Xcc-8004.4337.1 0.43 -0.1 4,155,021 - Xcc-8004.4337.1 0.43 -2.2 4,155,113 + Xcc-8004.4337.1 0.55 +0.0 4,155,113 + Xcc-8004.4337.1 0.55 +2.8 4,155,114 - Xcc-8004.4337.1 0.56 +0.3 4,155,114 - Xcc-8004.4337.1 0.56 -1.3 4,155,210 - Xcc-8004.4337.1 0.69 -1.4 4,155,210 - Xcc-8004.4337.1 0.69 +0.3 4,155,210 - Xcc-8004.4337.1 0.69 -0.6 4,155,407 + -1.0 4,155,407 + +0.8 4,155,408 - -0.8 4,155,408 - +0.2 4,155,408 - -0.7 4,155,432 - -0.3 4,155,432 - -0.6 4,155,432 - +0.2 4,155,432 - -0.4 4,155,511 + -0.5 4,155,675 + +0.2 4,155,728 + Xcc-8004.4338.1 0.49 +0.9 4,155,728 + Xcc-8004.4338.1 0.49 +0.6 4,155,729 - Xcc-8004.4338.1 0.50 -1.1 4,155,729 - Xcc-8004.4338.1 0.50 +0.1 4,155,729 - Xcc-8004.4338.1 0.50 +1.5 4,155,729 - Xcc-8004.4338.1 0.50 -0.3 4,155,729 - Xcc-8004.4338.1 0.50 +1.1 4,155,729 - Xcc-8004.4338.1 0.50 -0.1 4,155,729 - Xcc-8004.4338.1 0.50 -0.5 4,155,729 - Xcc-8004.4338.1 0.50 -0.4 4,155,768 + Xcc-8004.4338.1 0.85 +0.5 4,155,769 - Xcc-8004.4338.1 0.86 +0.3 4,155,769 - Xcc-8004.4338.1 0.86 +1.5 4,155,769 - Xcc-8004.4338.1 0.86 +1.9 4,156,007 - Xcc-8004.4339.1 0.54 -0.6 4,156,007 - Xcc-8004.4339.1 0.54 -0.2 4,156,019 - Xcc-8004.4339.1 0.57 -2.3 4,156,019 - Xcc-8004.4339.1 0.57 -2.6 4,156,080 - Xcc-8004.4339.1 0.71 -1.1 4,156,300 - Xcc-8004.4340.1 0.10 +0.6 4,156,746 + Xcc-8004.4340.1 0.60 +0.3 4,156,746 + Xcc-8004.4340.1 0.60 -1.1
Or see this region's nucleotide sequence