Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.846.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.844.1 and Xcc-8004.845.1 overlap by 11 nucleotidesXcc-8004.845.1 and Xcc-8004.846.1 overlap by 4 nucleotidesXcc-8004.846.1 and Xcc-8004.847.1 overlap by 8 nucleotides Xcc-8004.844.1: Xcc-8004.844.1 - FIG01210600: hypothetical protein, at 796,354 to 796,611 Xcc-8004.844.1 Xcc-8004.845.1: Xcc-8004.845.1 - Diaminopimelate epimerase (EC 5.1.1.7), at 796,601 to 797,455 Xcc-8004.845.1 Xcc-8004.846.1: Xcc-8004.846.1 - Protein of unknown function DUF484, at 797,452 to 798,120 Xcc-8004.846.1 Xcc-8004.847.1: Xcc-8004.847.1 - Site-specific tyrosine recombinase, at 798,113 to 799,081 Xcc-8004.847.1 Position (kb) 797 798 799Strain fitness (log2 ratio) -1 0 1 2at 797.593 kb on + strand, within Xcc-8004.846.1at 797.948 kb on - strand, within Xcc-8004.846.1at 797.948 kb on - strand, within Xcc-8004.846.1at 797.948 kb on - strand, within Xcc-8004.846.1at 798.025 kb on - strand, within Xcc-8004.846.1at 798.043 kb on + strand, within Xcc-8004.846.1at 798.043 kb on + strand, within Xcc-8004.846.1at 798.057 kb on + strandat 798.057 kb on + strandat 798.057 kb on + strandat 798.058 kb on - strandat 798.429 kb on - strand, within Xcc-8004.847.1at 798.608 kb on + strand, within Xcc-8004.847.1at 798.998 kb on + strandat 798.998 kb on + strandat 798.999 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
797,593 + Xcc-8004.846.1 0.21 -1.7
797,948 - Xcc-8004.846.1 0.74 +2.0
797,948 - Xcc-8004.846.1 0.74 +1.8
797,948 - Xcc-8004.846.1 0.74 -0.9
798,025 - Xcc-8004.846.1 0.86 +1.6
798,043 + Xcc-8004.846.1 0.88 +0.3
798,043 + Xcc-8004.846.1 0.88 +1.7
798,057 + +1.2
798,057 + +0.8
798,057 + +1.4
798,058 - -0.7
798,429 - Xcc-8004.847.1 0.33 +0.7
798,608 + Xcc-8004.847.1 0.51 -0.3
798,998 + +0.3
798,998 + -0.0
798,999 - +0.3

Or see this region's nucleotide sequence