Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16420

Experiment: Cephalothin 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16410 and BWI76_RS16415 are separated by 57 nucleotidesBWI76_RS16415 and BWI76_RS16420 are separated by 92 nucleotidesBWI76_RS16420 and BWI76_RS16425 are separated by 270 nucleotidesBWI76_RS16425 and BWI76_RS16430 are separated by 225 nucleotides BWI76_RS16410: BWI76_RS16410 - pyridoxamine 5'-phosphate oxidase, at 3,405,151 to 3,405,807 _RS16410 BWI76_RS16415: BWI76_RS16415 - lysozyme inhibitor, at 3,405,865 to 3,406,188 _RS16415 BWI76_RS16420: BWI76_RS16420 - anhydro-N-acetylmuramic acid kinase, at 3,406,281 to 3,407,405 _RS16420 BWI76_RS16425: BWI76_RS16425 - hypothetical protein, at 3,407,676 to 3,408,143 _RS16425 BWI76_RS16430: BWI76_RS16430 - GGDEF domain-containing protein, at 3,408,369 to 3,409,721 _RS16430 Position (kb) 3406 3407 3408Strain fitness (log2 ratio) -2 -1 0 1at 3406.229 kb on - strandat 3406.593 kb on + strand, within BWI76_RS16420at 3406.913 kb on - strand, within BWI76_RS16420at 3407.246 kb on - strand, within BWI76_RS16420at 3407.285 kb on + strand, within BWI76_RS16420at 3407.303 kb on - strandat 3407.312 kb on - strandat 3407.398 kb on + strandat 3407.435 kb on + strandat 3407.475 kb on - strandat 3407.510 kb on + strandat 3407.510 kb on + strandat 3407.528 kb on - strandat 3407.553 kb on - strandat 3407.581 kb on + strandat 3407.672 kb on - strandat 3407.705 kb on - strandat 3407.732 kb on - strand, within BWI76_RS16425at 3407.819 kb on - strand, within BWI76_RS16425at 3407.976 kb on + strandat 3408.030 kb on + strand, within BWI76_RS16425at 3408.121 kb on + strandat 3408.122 kb on + strandat 3408.130 kb on - strandat 3408.138 kb on + strandat 3408.138 kb on + strandat 3408.138 kb on + strandat 3408.138 kb on + strandat 3408.138 kb on + strandat 3408.144 kb on + strandat 3408.144 kb on + strandat 3408.145 kb on + strandat 3408.145 kb on + strandat 3408.145 kb on + strandat 3408.145 kb on + strandat 3408.145 kb on + strandat 3408.145 kb on + strandat 3408.145 kb on + strandat 3408.146 kb on - strandat 3408.146 kb on - strandat 3408.152 kb on - strandat 3408.153 kb on - strandat 3408.158 kb on + strandat 3408.158 kb on + strandat 3408.158 kb on + strandat 3408.252 kb on - strandat 3408.254 kb on - strandat 3408.254 kb on - strandat 3408.331 kb on - strandat 3408.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml
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3,406,229 - -1.8
3,406,593 + BWI76_RS16420 0.28 -1.1
3,406,913 - BWI76_RS16420 0.56 -1.1
3,407,246 - BWI76_RS16420 0.86 -1.0
3,407,285 + BWI76_RS16420 0.89 -1.5
3,407,303 - -0.5
3,407,312 - -0.5
3,407,398 + -1.3
3,407,435 + -1.6
3,407,475 - -0.2
3,407,510 + -0.2
3,407,510 + +0.5
3,407,528 - +0.0
3,407,553 - +0.6
3,407,581 + -0.5
3,407,672 - +0.3
3,407,705 - +1.0
3,407,732 - BWI76_RS16425 0.12 +1.3
3,407,819 - BWI76_RS16425 0.31 +0.9
3,407,976 + +1.2
3,408,030 + BWI76_RS16425 0.76 +0.2
3,408,121 + +0.3
3,408,122 + +0.3
3,408,130 - -0.2
3,408,138 + +0.0
3,408,138 + -0.5
3,408,138 + +0.1
3,408,138 + -0.8
3,408,138 + +0.6
3,408,144 + +0.3
3,408,144 + -0.8
3,408,145 + -1.3
3,408,145 + -0.8
3,408,145 + -0.7
3,408,145 + -0.7
3,408,145 + -0.1
3,408,145 + -0.7
3,408,145 + +0.0
3,408,146 - -2.1
3,408,146 - +0.1
3,408,152 - -0.8
3,408,153 - -0.2
3,408,158 + -1.0
3,408,158 + -0.1
3,408,158 + -0.1
3,408,252 - +0.0
3,408,254 - -0.9
3,408,254 - -0.2
3,408,331 - -1.1
3,408,367 - +0.2

Or see this region's nucleotide sequence