Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.180.1 and Xcc-8004.181.1 overlap by 78 nucleotides Xcc-8004.181.1 and Xcc-8004.183.1 are separated by 185 nucleotides Xcc-8004.183.1 and Xcc-8004.184.1 are separated by 261 nucleotides
Xcc-8004.180.1: Xcc-8004.180.1 - RhsD protein, at 173,232 to 173,657
Xcc-8004.180.1
Xcc-8004.181.1: Xcc-8004.181.1 - putative; ORF located using Glimmer/Genemark, at 173,580 to 174,251
Xcc-8004.181.1
Xcc-8004.183.1: Xcc-8004.183.1 - FIG01211553: hypothetical protein, at 174,437 to 174,769
Xcc-8004.183.1
Xcc-8004.184.1: Xcc-8004.184.1 - Alpha-amylase (EC 3.2.1.1), at 175,031 to 178,147
Xcc-8004.184.1
Position (kb) 174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 173.439 kb on + strand, within Xcc-8004.180.1 at 173.440 kb on - strand, within Xcc-8004.180.1 at 173.440 kb on - strand, within Xcc-8004.180.1 at 173.501 kb on + strand, within Xcc-8004.180.1 at 173.585 kb on + strand at 173.585 kb on + strand at 173.606 kb on + strand at 173.656 kb on - strand at 173.656 kb on - strand at 173.656 kb on - strand at 173.656 kb on - strand at 173.656 kb on - strand at 173.679 kb on + strand, within Xcc-8004.181.1 at 173.680 kb on - strand, within Xcc-8004.181.1 at 173.680 kb on - strand, within Xcc-8004.181.1 at 173.680 kb on - strand, within Xcc-8004.181.1 at 173.850 kb on + strand, within Xcc-8004.181.1 at 174.037 kb on + strand, within Xcc-8004.181.1 at 174.057 kb on + strand, within Xcc-8004.181.1 at 174.058 kb on - strand, within Xcc-8004.181.1 at 174.058 kb on - strand, within Xcc-8004.181.1 at 174.100 kb on + strand, within Xcc-8004.181.1 at 174.111 kb on + strand, within Xcc-8004.181.1 at 174.132 kb on - strand, within Xcc-8004.181.1 at 174.146 kb on + strand, within Xcc-8004.181.1 at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.278 kb on - strand at 174.278 kb on - strand at 174.278 kb on - strand at 174.288 kb on - strand at 174.428 kb on + strand at 174.428 kb on + strand at 174.429 kb on - strand at 174.429 kb on - strand at 174.429 kb on - strand at 174.471 kb on + strand, within Xcc-8004.183.1 at 174.471 kb on + strand, within Xcc-8004.183.1 at 174.471 kb on + strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.643 kb on - strand, within Xcc-8004.183.1 at 174.796 kb on + strand at 174.796 kb on + strand at 174.797 kb on - strand at 174.812 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.832 kb on - strand at 174.832 kb on - strand at 174.832 kb on - strand at 174.832 kb on - strand at 174.837 kb on + strand at 174.838 kb on - strand at 174.883 kb on + strand at 174.884 kb on - strand at 175.044 kb on + strand at 175.044 kb on + strand at 175.044 kb on + strand at 175.044 kb on + strand at 175.045 kb on - strand at 175.045 kb on - strand at 175.045 kb on - strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.394 kb on + strand, within Xcc-8004.184.1 at 175.395 kb on - strand, within Xcc-8004.184.1 at 175.482 kb on + strand, within Xcc-8004.184.1 at 175.483 kb on - strand, within Xcc-8004.184.1 at 175.483 kb on - strand, within Xcc-8004.184.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 173,439 + Xcc-8004.180.1 0.49 +0.6 173,440 - Xcc-8004.180.1 0.49 -0.1 173,440 - Xcc-8004.180.1 0.49 -0.1 173,501 + Xcc-8004.180.1 0.63 -1.3 173,585 + +0.6 173,585 + +2.0 173,606 + +0.9 173,656 - +0.2 173,656 - +1.7 173,656 - -2.0 173,656 - -2.7 173,656 - +0.2 173,679 + Xcc-8004.181.1 0.15 -0.9 173,680 - Xcc-8004.181.1 0.15 -0.6 173,680 - Xcc-8004.181.1 0.15 -1.5 173,680 - Xcc-8004.181.1 0.15 -0.4 173,850 + Xcc-8004.181.1 0.40 -2.8 174,037 + Xcc-8004.181.1 0.68 -0.3 174,057 + Xcc-8004.181.1 0.71 +1.1 174,058 - Xcc-8004.181.1 0.71 +1.7 174,058 - Xcc-8004.181.1 0.71 +0.2 174,100 + Xcc-8004.181.1 0.77 -0.2 174,111 + Xcc-8004.181.1 0.79 -0.8 174,132 - Xcc-8004.181.1 0.82 +0.2 174,146 + Xcc-8004.181.1 0.84 -0.1 174,277 + +0.8 174,277 + +2.7 174,277 + -2.0 174,277 + -0.4 174,277 + +0.3 174,277 + -0.2 174,277 + -0.2 174,277 + +0.3 174,278 - -1.7 174,278 - +1.4 174,278 - -1.1 174,288 - -2.4 174,428 + +2.0 174,428 + +1.1 174,429 - +0.5 174,429 - +1.5 174,429 - -3.2 174,471 + Xcc-8004.183.1 0.10 +0.1 174,471 + Xcc-8004.183.1 0.10 -0.7 174,471 + Xcc-8004.183.1 0.10 +0.7 174,472 - Xcc-8004.183.1 0.11 -1.6 174,472 - Xcc-8004.183.1 0.11 -0.5 174,472 - Xcc-8004.183.1 0.11 +1.1 174,472 - Xcc-8004.183.1 0.11 -2.5 174,472 - Xcc-8004.183.1 0.11 -0.9 174,642 + Xcc-8004.183.1 0.62 -0.1 174,642 + Xcc-8004.183.1 0.62 +0.5 174,642 + Xcc-8004.183.1 0.62 -0.3 174,642 + Xcc-8004.183.1 0.62 -0.9 174,643 - Xcc-8004.183.1 0.62 -0.6 174,796 + +1.1 174,796 + -0.2 174,797 - -0.7 174,812 + -1.2 174,831 + -1.9 174,831 + -0.0 174,831 + -0.9 174,831 + -1.6 174,831 + -0.3 174,831 + +0.5 174,832 - +0.7 174,832 - +0.4 174,832 - -3.0 174,832 - +0.1 174,837 + +0.1 174,838 - -0.3 174,883 + +1.0 174,884 - -0.3 175,044 + +0.9 175,044 + -3.0 175,044 + -0.4 175,044 + -0.6 175,045 - +1.1 175,045 - -1.5 175,045 - +0.9 175,121 + -2.4 175,121 + +2.5 175,121 + -0.6 175,121 + -1.8 175,121 + +0.6 175,121 + +0.7 175,121 + -1.8 175,122 - -1.6 175,122 - +2.1 175,122 - -2.3 175,122 - -0.1 175,122 - +0.0 175,125 + -1.6 175,125 + -2.1 175,125 + -0.6 175,125 + +0.0 175,125 + +0.4 175,125 + -2.4 175,125 + -0.4 175,126 - -1.8 175,126 - -0.3 175,126 - -0.3 175,126 - -1.8 175,126 - -1.9 175,126 - +0.4 175,126 - -0.4 175,126 - -1.0 175,126 - -1.2 175,126 - -2.1 175,126 - -0.1 175,126 - +0.2 175,394 + Xcc-8004.184.1 0.12 -2.1 175,395 - Xcc-8004.184.1 0.12 -0.4 175,482 + Xcc-8004.184.1 0.14 -1.0 175,483 - Xcc-8004.184.1 0.15 +0.9 175,483 - Xcc-8004.184.1 0.15 -0.4
Or see this region's nucleotide sequence