Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2616.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI
2,524,753	-				+1.4
2,524,989	-				+0.4
2,524,996	+				-1.4
2,525,119	+		Xcc-8004.2616.1	0.11	-0.5
2,525,119	+		Xcc-8004.2616.1	0.11	-0.1
2,525,119	+		Xcc-8004.2616.1	0.11	-0.5
2,525,120	-		Xcc-8004.2616.1	0.11	+1.3
2,525,120	-		Xcc-8004.2616.1	0.11	-0.1
2,525,145	+		Xcc-8004.2616.1	0.14	-1.3
2,525,146	-		Xcc-8004.2616.1	0.14	+0.1
2,525,462	+		Xcc-8004.2616.1	0.46	-1.1
2,525,462	+		Xcc-8004.2616.1	0.46	-0.3
2,525,462	+		Xcc-8004.2616.1	0.46	+0.2
2,525,462	+		Xcc-8004.2616.1	0.46	-0.9
2,525,463	-		Xcc-8004.2616.1	0.46	+0.1
2,525,473	+		Xcc-8004.2616.1	0.47	+0.6
2,525,474	-		Xcc-8004.2616.1	0.47	+0.8
2,525,474	-		Xcc-8004.2616.1	0.47	-0.4
2,525,474	-		Xcc-8004.2616.1	0.47	+1.0
2,525,568	+		Xcc-8004.2616.1	0.57	-0.2
2,525,568	+		Xcc-8004.2616.1	0.57	+0.8
2,525,569	-		Xcc-8004.2616.1	0.57	+0.6
2,525,569	-		Xcc-8004.2616.1	0.57	-0.8
2,525,585	-		Xcc-8004.2616.1	0.59	-1.0
2,525,733	+		Xcc-8004.2616.1	0.74	-0.6
2,525,733	+		Xcc-8004.2616.1	0.74	-0.6
2,525,733	+		Xcc-8004.2616.1	0.74	-0.8
2,525,734	-		Xcc-8004.2616.1	0.74	-1.5
2,525,734	-		Xcc-8004.2616.1	0.74	-1.6
2,525,743	+		Xcc-8004.2616.1	0.75	-0.6
2,525,743	+		Xcc-8004.2616.1	0.75	-1.1
2,525,743	+		Xcc-8004.2616.1	0.75	+0.5
2,525,743	+		Xcc-8004.2616.1	0.75	-1.2
2,525,744	-		Xcc-8004.2616.1	0.75	+0.2
2,525,794	+		Xcc-8004.2616.1	0.80	+0.7
2,525,794	+		Xcc-8004.2616.1	0.80	+0.6
2,525,794	+		Xcc-8004.2616.1	0.80	-1.5
2,525,794	+		Xcc-8004.2616.1	0.80	+2.9
2,525,794	+		Xcc-8004.2616.1	0.80	-0.8
2,525,794	+		Xcc-8004.2616.1	0.80	+0.2
2,525,794	+		Xcc-8004.2616.1	0.80	-1.1
2,525,794	+		Xcc-8004.2616.1	0.80	-0.3
2,525,794	+		Xcc-8004.2616.1	0.80	-2.2
2,525,795	-		Xcc-8004.2616.1	0.80	+0.2
2,525,795	-		Xcc-8004.2616.1	0.80	+0.1
2,525,795	-		Xcc-8004.2616.1	0.80	+0.3
2,525,795	-		Xcc-8004.2616.1	0.80	+1.5
2,525,795	-		Xcc-8004.2616.1	0.80	+1.1
2,525,795	-		Xcc-8004.2616.1	0.80	+1.0
2,525,795	-		Xcc-8004.2616.1	0.80	-0.1
2,525,795	-		Xcc-8004.2616.1	0.80	-0.9
2,525,795	-		Xcc-8004.2616.1	0.80	-1.2
2,525,795	-		Xcc-8004.2616.1	0.80	-0.6
2,525,795	-		Xcc-8004.2616.1	0.80	-0.6
2,525,795	-		Xcc-8004.2616.1	0.80	-0.8
2,525,795	-		Xcc-8004.2616.1	0.80	+0.2
2,525,795	-		Xcc-8004.2616.1	0.80	-0.5
2,525,795	-		Xcc-8004.2616.1	0.80	+0.9
2,525,795	-		Xcc-8004.2616.1	0.80	-0.5
2,525,795	-		Xcc-8004.2616.1	0.80	-0.4
2,525,795	-		Xcc-8004.2616.1	0.80	+0.6
2,525,795	-		Xcc-8004.2616.1	0.80	+0.2
2,525,823	+		Xcc-8004.2616.1	0.83	-1.7
2,525,823	+		Xcc-8004.2616.1	0.83	+1.2
2,525,824	-		Xcc-8004.2616.1	0.83	-1.1
2,525,824	-		Xcc-8004.2616.1	0.83	+0.4
2,525,824	-		Xcc-8004.2616.1	0.83	-0.3
2,525,824	-		Xcc-8004.2616.1	0.83	-0.8
2,525,824	-		Xcc-8004.2616.1	0.83	-1.4
2,525,931	+				+1.0
2,525,931	+				+0.2
2,525,931	+				+1.7
2,525,931	+				-2.0
2,525,931	+				+1.1
2,525,931	+				-1.0
2,525,931	+				+0.0
2,525,931	+				-0.0
2,525,931	+				-1.7
2,525,931	+				-0.0
2,525,931	+				-1.0
2,525,931	+				+2.2
2,525,931	+				+0.4
2,525,932	-				+0.3
2,525,932	-				+0.7
2,525,932	-				-1.6
2,525,932	-				-1.0
2,525,932	-				+1.0
2,525,932	-				-1.6
2,525,932	-				-0.1
2,525,932	-				+0.4
2,525,932	-				-0.9
2,526,038	+				+0.1
2,526,038	+				+1.8
2,526,038	+				-0.9
2,526,038	+				+0.8
2,526,039	-				+0.3
2,526,039	-				-0.6
2,526,039	-				+3.1
2,526,039	-				-1.3
2,526,183	+				+1.6
2,526,184	-				+0.8
2,526,184	-				-1.4
2,526,184	-				-0.4
2,526,191	+				-0.7
2,526,192	-				+0.6
2,526,204	+				+0.4
2,526,204	+				-0.8
2,526,204	+				-0.4
2,526,204	+				+0.5
2,526,204	+				+0.2
2,526,204	+				-0.1
2,526,204	+				-0.2
2,526,204	+				+1.7
2,526,205	-				-0.4
2,526,205	-				-0.2
2,526,205	-				+0.6
2,526,205	-				-1.0
2,526,205	-				+1.1
2,526,205	-				+1.1
2,526,205	-				-0.3
2,526,205	-				+0.2
2,526,205	-				+2.4
2,526,205	-				-1.1
2,526,205	-				-0.5
2,526,205	-				-1.0
2,526,205	-				-0.7
2,526,226	+				-0.3
2,526,226	+				+0.1
2,526,226	+				+0.9
2,526,226	+				+1.0
2,526,227	-				+1.0
2,526,227	-				+0.4
2,526,227	-				-0.4
2,526,227	-				+0.6
2,526,285	+				-0.2
2,526,285	+				+0.8
2,526,285	+				-1.5
2,526,285	+				-1.0
2,526,285	+				-0.4
2,526,285	+				-0.6
2,526,285	+				-0.3
2,526,286	-				-0.1
2,526,286	-				-1.4
2,526,286	-				-1.1
2,526,286	-				-1.0
2,526,286	-				-0.4
2,526,286	-				+3.5
2,526,286	-				-1.5
2,526,286	-				+3.0
2,526,286	-				-0.6
2,526,286	-				-1.1
2,526,289	+				-1.6
2,526,289	+				+1.5
2,526,289	+				-1.0
2,526,289	+				-1.8
2,526,289	+				-0.7
2,526,289	+				+0.2
2,526,289	+				-1.6
2,526,289	+				+0.2
2,526,290	-				-0.9
2,526,290	-				+0.7
2,526,290	-				-1.4
2,526,290	-				+0.1
2,526,290	-				-0.2
2,526,290	-				-0.6
2,526,290	-				-1.1
2,526,290	-				+0.6
2,526,290	-				+0.2
2,526,312	+				-1.0
2,526,312	+				+0.3
2,526,391	-				-0.4
2,526,391	-				-1.0
2,526,444	+				+1.0
2,526,445	-				+0.8
2,526,445	-				-0.2
2,526,445	-				-1.7
2,526,445	-				-0.4
2,526,445	-				-2.3
2,526,445	-				-0.5
2,526,445	-				-0.1
2,526,445	-				+1.1
2,526,445	-				+0.1
2,526,468	+		Xcc-8004.2617.1	0.11	+0.4
2,526,469	-		Xcc-8004.2617.1	0.11	-0.1
2,526,642	+		Xcc-8004.2617.1	0.32	+2.2
2,526,642	+		Xcc-8004.2617.1	0.32	-0.7
2,526,642	+		Xcc-8004.2617.1	0.32	-0.4
2,526,642	+		Xcc-8004.2617.1	0.32	+0.4
2,526,642	+		Xcc-8004.2617.1	0.32	-0.2
2,526,642	+		Xcc-8004.2617.1	0.32	-1.0
2,526,642	+		Xcc-8004.2617.1	0.32	-0.7
2,526,642	+		Xcc-8004.2617.1	0.32	+0.5
2,526,642	+		Xcc-8004.2617.1	0.32	+0.1
2,526,642	+		Xcc-8004.2617.1	0.32	+1.5
2,526,642	+		Xcc-8004.2617.1	0.32	-2.4
2,526,642	+		Xcc-8004.2617.1	0.32	-2.1
2,526,643	-		Xcc-8004.2617.1	0.32	+0.6
2,526,643	-		Xcc-8004.2617.1	0.32	-0.1
2,526,643	-		Xcc-8004.2617.1	0.32	-0.6
2,526,666	+		Xcc-8004.2617.1	0.35	-2.0
2,526,666	+		Xcc-8004.2617.1	0.35	+1.7
2,526,666	+		Xcc-8004.2617.1	0.35	+0.2
2,526,667	-		Xcc-8004.2617.1	0.35	-1.3
2,526,667	-		Xcc-8004.2617.1	0.35	+0.9
2,526,667	-		Xcc-8004.2617.1	0.35	+0.9
2,526,667	-		Xcc-8004.2617.1	0.35	-0.3
2,526,667	-		Xcc-8004.2617.1	0.35	+0.2
2,526,667	-		Xcc-8004.2617.1	0.35	-0.3
2,526,837	+		Xcc-8004.2617.1	0.56	-0.4
2,526,837	+		Xcc-8004.2617.1	0.56	+1.0
2,526,837	+		Xcc-8004.2617.1	0.56	+0.1
2,526,837	+		Xcc-8004.2617.1	0.56	+0.0
2,526,837	+		Xcc-8004.2617.1	0.56	+0.1
2,526,837	+		Xcc-8004.2617.1	0.56	-0.1
2,526,838	-		Xcc-8004.2617.1	0.56	-0.4
2,526,838	-		Xcc-8004.2617.1	0.56	-1.4
2,526,838	-		Xcc-8004.2617.1	0.56	-0.6
2,526,838	-		Xcc-8004.2617.1	0.56	-0.7
2,526,838	-		Xcc-8004.2617.1	0.56	+2.0
2,526,896	-		Xcc-8004.2617.1	0.63	-0.0
2,526,896	-		Xcc-8004.2617.1	0.63	+1.7
2,526,957	+		Xcc-8004.2617.1	0.71	-0.1
2,526,957	+		Xcc-8004.2617.1	0.71	+1.0
2,526,957	+		Xcc-8004.2617.1	0.71	+0.7
2,526,958	-		Xcc-8004.2617.1	0.71	-0.3
2,526,958	-		Xcc-8004.2617.1	0.71	+2.0
2,526,958	-		Xcc-8004.2617.1	0.71	+0.7
2,526,979	+		Xcc-8004.2617.1	0.74	+0.4
2,526,979	+		Xcc-8004.2617.1	0.74	+0.3
2,526,981	+		Xcc-8004.2617.1	0.74	+0.0
2,526,981	+		Xcc-8004.2617.1	0.74	+0.1
2,526,981	+		Xcc-8004.2617.1	0.74	+0.6
2,526,981	+		Xcc-8004.2617.1	0.74	+1.3
2,526,981	+		Xcc-8004.2617.1	0.74	-1.4
2,526,981	+		Xcc-8004.2617.1	0.74	-0.5
2,526,981	+		Xcc-8004.2617.1	0.74	-0.7
2,526,981	+		Xcc-8004.2617.1	0.74	-0.7
2,526,981	+		Xcc-8004.2617.1	0.74	+0.8
2,526,981	+		Xcc-8004.2617.1	0.74	-0.6
2,526,981	+		Xcc-8004.2617.1	0.74	+2.6
2,526,981	+		Xcc-8004.2617.1	0.74	+0.6
2,526,982	-		Xcc-8004.2617.1	0.74	+0.7
2,526,982	-		Xcc-8004.2617.1	0.74	-1.4
2,526,982	-		Xcc-8004.2617.1	0.74	-0.1
2,526,982	-		Xcc-8004.2617.1	0.74	-0.5
2,526,982	-		Xcc-8004.2617.1	0.74	-2.0
2,526,982	-		Xcc-8004.2617.1	0.74	-0.1
2,526,982	-		Xcc-8004.2617.1	0.74	-1.6
2,526,982	-		Xcc-8004.2617.1	0.74	+0.3
2,526,982	-		Xcc-8004.2617.1	0.74	-0.1