Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.943.1 and Xcc-8004.944.1 overlap by 14 nucleotides Xcc-8004.944.1 and Xcc-8004.945.1 are separated by 26 nucleotides Xcc-8004.945.1 and Xcc-8004.946.1 are separated by 9 nucleotides
Xcc-8004.943.1: Xcc-8004.943.1 - General secretion pathway protein E, at 888,122 to 889,621
Xcc-8004.943.1
Xcc-8004.944.1: Xcc-8004.944.1 - General secretion pathway protein F, at 889,608 to 890,804
Xcc-8004.944.1
Xcc-8004.945.1: Xcc-8004.945.1 - General secretion pathway protein G, at 890,831 to 891,295
Xcc-8004.945.1
Xcc-8004.946.1: Xcc-8004.946.1 - General secretion pathway protein H, at 891,305 to 891,829
Xcc-8004.946.1
Xcc-8004.947.1: Xcc-8004.947.1 - General secretion pathway protein I, at 891,789 to 892,184
Xcc-8004.947.1
Position (kb) 889
890
891 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 888.917 kb on + strand, within Xcc-8004.943.1 at 888.983 kb on + strand, within Xcc-8004.943.1 at 889.345 kb on + strand, within Xcc-8004.943.1 at 889.345 kb on + strand, within Xcc-8004.943.1 at 889.400 kb on + strand, within Xcc-8004.943.1 at 889.401 kb on - strand, within Xcc-8004.943.1 at 889.421 kb on + strand, within Xcc-8004.943.1 at 889.421 kb on + strand, within Xcc-8004.943.1 at 889.422 kb on - strand, within Xcc-8004.943.1 at 889.422 kb on - strand, within Xcc-8004.943.1 at 889.507 kb on - strand at 889.624 kb on - strand at 889.853 kb on + strand, within Xcc-8004.944.1 at 889.853 kb on + strand, within Xcc-8004.944.1 at 890.592 kb on + strand, within Xcc-8004.944.1 at 890.593 kb on - strand, within Xcc-8004.944.1 at 890.593 kb on - strand, within Xcc-8004.944.1 at 890.737 kb on + strand at 890.737 kb on + strand at 891.063 kb on - strand, within Xcc-8004.945.1 at 891.146 kb on + strand, within Xcc-8004.945.1 at 891.146 kb on + strand, within Xcc-8004.945.1 at 891.146 kb on + strand, within Xcc-8004.945.1 at 891.146 kb on + strand, within Xcc-8004.945.1 at 891.227 kb on + strand, within Xcc-8004.945.1 at 891.227 kb on + strand, within Xcc-8004.945.1 at 891.228 kb on - strand, within Xcc-8004.945.1 at 891.228 kb on - strand, within Xcc-8004.945.1 at 891.411 kb on + strand, within Xcc-8004.946.1 at 891.587 kb on + strand, within Xcc-8004.946.1 at 891.587 kb on + strand, within Xcc-8004.946.1 at 891.643 kb on + strand, within Xcc-8004.946.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 888,917 + Xcc-8004.943.1 0.53 -0.6 888,983 + Xcc-8004.943.1 0.57 -0.4 889,345 + Xcc-8004.943.1 0.82 +1.0 889,345 + Xcc-8004.943.1 0.82 -1.3 889,400 + Xcc-8004.943.1 0.85 -0.2 889,401 - Xcc-8004.943.1 0.85 -0.1 889,421 + Xcc-8004.943.1 0.87 -0.0 889,421 + Xcc-8004.943.1 0.87 +0.0 889,422 - Xcc-8004.943.1 0.87 +3.5 889,422 - Xcc-8004.943.1 0.87 -0.7 889,507 - -0.8 889,624 - -0.6 889,853 + Xcc-8004.944.1 0.20 -2.6 889,853 + Xcc-8004.944.1 0.20 -0.5 890,592 + Xcc-8004.944.1 0.82 -2.8 890,593 - Xcc-8004.944.1 0.82 -1.4 890,593 - Xcc-8004.944.1 0.82 +0.4 890,737 + -1.1 890,737 + -2.3 891,063 - Xcc-8004.945.1 0.50 -0.0 891,146 + Xcc-8004.945.1 0.68 +0.8 891,146 + Xcc-8004.945.1 0.68 -1.0 891,146 + Xcc-8004.945.1 0.68 -0.4 891,146 + Xcc-8004.945.1 0.68 +0.5 891,227 + Xcc-8004.945.1 0.85 -1.3 891,227 + Xcc-8004.945.1 0.85 -0.9 891,228 - Xcc-8004.945.1 0.85 -1.0 891,228 - Xcc-8004.945.1 0.85 -1.8 891,411 + Xcc-8004.946.1 0.20 +1.1 891,587 + Xcc-8004.946.1 0.54 -0.9 891,587 + Xcc-8004.946.1 0.54 +0.7 891,643 + Xcc-8004.946.1 0.64 +0.6
Or see this region's nucleotide sequence