Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.811.1 and Xcc-8004.812.1 are separated by 632 nucleotides Xcc-8004.812.1 and Xcc-8004.813.1 are separated by 299 nucleotides
Xcc-8004.811.1: Xcc-8004.811.1 - FIG01211260: hypothetical protein, at 754,456 to 755,466
Xcc-8004.811.1
Xcc-8004.812.1: Xcc-8004.812.1 - histidine kinase-response regulator hybrid protein, at 756,099 to 757,046
Xcc-8004.812.1
Xcc-8004.813.1: Xcc-8004.813.1 - Predicted Zn-dependent peptidases, at 757,346 to 760,225
Xcc-8004.813.1
Position (kb) 756
757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 755.155 kb on + strand, within Xcc-8004.811.1 at 755.155 kb on + strand, within Xcc-8004.811.1 at 755.155 kb on + strand, within Xcc-8004.811.1 at 755.156 kb on - strand, within Xcc-8004.811.1 at 755.402 kb on - strand at 755.484 kb on + strand at 755.504 kb on - strand at 755.504 kb on - strand at 755.627 kb on - strand at 755.644 kb on + strand at 755.644 kb on + strand at 755.644 kb on + strand at 755.645 kb on - strand at 755.645 kb on - strand at 755.645 kb on - strand at 755.645 kb on - strand at 755.645 kb on - strand at 755.654 kb on - strand at 755.673 kb on + strand at 755.673 kb on + strand at 755.674 kb on - strand at 755.674 kb on - strand at 755.751 kb on + strand at 755.751 kb on + strand at 755.751 kb on + strand at 755.752 kb on - strand at 755.752 kb on - strand at 755.752 kb on - strand at 755.818 kb on + strand at 755.818 kb on + strand at 755.819 kb on - strand at 755.819 kb on - strand at 755.819 kb on - strand at 755.839 kb on - strand at 756.012 kb on - strand at 756.046 kb on + strand at 756.047 kb on - strand at 756.081 kb on - strand at 756.081 kb on - strand at 756.081 kb on - strand at 756.081 kb on - strand at 756.200 kb on - strand, within Xcc-8004.812.1 at 756.200 kb on - strand, within Xcc-8004.812.1 at 756.200 kb on - strand, within Xcc-8004.812.1 at 756.211 kb on - strand, within Xcc-8004.812.1 at 756.709 kb on + strand, within Xcc-8004.812.1 at 756.710 kb on - strand, within Xcc-8004.812.1 at 756.746 kb on + strand, within Xcc-8004.812.1 at 756.747 kb on - strand, within Xcc-8004.812.1 at 756.958 kb on + strand at 756.958 kb on + strand at 756.958 kb on + strand at 757.137 kb on + strand at 757.138 kb on - strand at 757.276 kb on + strand at 757.276 kb on + strand at 757.277 kb on - strand at 757.542 kb on + strand at 757.542 kb on + strand at 757.542 kb on + strand at 757.542 kb on + strand at 757.542 kb on + strand at 757.543 kb on - strand at 757.543 kb on - strand at 757.543 kb on - strand at 757.543 kb on - strand at 757.543 kb on - strand at 757.543 kb on - strand at 757.761 kb on + strand, within Xcc-8004.813.1 at 757.761 kb on + strand, within Xcc-8004.813.1 at 757.761 kb on + strand, within Xcc-8004.813.1 at 757.761 kb on + strand, within Xcc-8004.813.1 at 757.761 kb on + strand, within Xcc-8004.813.1 at 757.761 kb on + strand, within Xcc-8004.813.1 at 757.761 kb on + strand, within Xcc-8004.813.1 at 757.761 kb on + strand, within Xcc-8004.813.1 at 757.761 kb on + strand, within Xcc-8004.813.1 at 757.761 kb on + strand, within Xcc-8004.813.1 at 757.762 kb on - strand, within Xcc-8004.813.1 at 757.762 kb on - strand, within Xcc-8004.813.1 at 757.762 kb on - strand, within Xcc-8004.813.1 at 757.762 kb on - strand, within Xcc-8004.813.1 at 757.762 kb on - strand, within Xcc-8004.813.1 at 757.762 kb on - strand, within Xcc-8004.813.1 at 757.806 kb on + strand, within Xcc-8004.813.1 at 757.974 kb on + strand, within Xcc-8004.813.1 at 757.974 kb on + strand, within Xcc-8004.813.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 755,155 + Xcc-8004.811.1 0.69 -0.8 755,155 + Xcc-8004.811.1 0.69 -1.2 755,155 + Xcc-8004.811.1 0.69 -1.6 755,156 - Xcc-8004.811.1 0.69 -1.3 755,402 - -0.7 755,484 + +0.2 755,504 - -1.0 755,504 - -1.5 755,627 - +0.4 755,644 + -1.0 755,644 + -1.3 755,644 + +0.3 755,645 - +0.3 755,645 - -1.6 755,645 - +0.4 755,645 - +0.0 755,645 - -1.1 755,654 - -0.3 755,673 + +1.5 755,673 + -1.9 755,674 - +0.4 755,674 - -0.1 755,751 + +0.2 755,751 + -0.6 755,751 + +1.7 755,752 - +0.8 755,752 - +2.6 755,752 - -0.0 755,818 + -0.7 755,818 + -1.1 755,819 - +1.9 755,819 - +0.3 755,819 - +1.6 755,839 - -1.6 756,012 - +1.3 756,046 + -0.2 756,047 - +0.4 756,081 - -0.2 756,081 - -3.5 756,081 - -0.0 756,081 - +0.1 756,200 - Xcc-8004.812.1 0.11 +0.8 756,200 - Xcc-8004.812.1 0.11 -0.6 756,200 - Xcc-8004.812.1 0.11 -0.9 756,211 - Xcc-8004.812.1 0.12 -0.9 756,709 + Xcc-8004.812.1 0.64 -1.8 756,710 - Xcc-8004.812.1 0.64 -2.4 756,746 + Xcc-8004.812.1 0.68 -0.4 756,747 - Xcc-8004.812.1 0.68 +0.4 756,958 + -1.2 756,958 + -0.7 756,958 + +2.0 757,137 + -1.9 757,138 - -0.7 757,276 + -1.5 757,276 + +0.3 757,277 - -1.1 757,542 + +0.4 757,542 + -1.5 757,542 + +2.2 757,542 + +0.2 757,542 + +1.0 757,543 - -0.8 757,543 - -1.8 757,543 - +0.7 757,543 - +0.5 757,543 - +2.3 757,543 - -1.6 757,761 + Xcc-8004.813.1 0.14 +0.6 757,761 + Xcc-8004.813.1 0.14 -2.6 757,761 + Xcc-8004.813.1 0.14 +0.9 757,761 + Xcc-8004.813.1 0.14 -2.3 757,761 + Xcc-8004.813.1 0.14 +0.5 757,761 + Xcc-8004.813.1 0.14 -1.4 757,761 + Xcc-8004.813.1 0.14 +0.1 757,761 + Xcc-8004.813.1 0.14 -1.7 757,761 + Xcc-8004.813.1 0.14 +1.5 757,761 + Xcc-8004.813.1 0.14 -0.8 757,762 - Xcc-8004.813.1 0.14 +1.1 757,762 - Xcc-8004.813.1 0.14 -0.6 757,762 - Xcc-8004.813.1 0.14 -1.7 757,762 - Xcc-8004.813.1 0.14 -2.5 757,762 - Xcc-8004.813.1 0.14 +0.8 757,762 - Xcc-8004.813.1 0.14 -0.1 757,806 + Xcc-8004.813.1 0.16 -0.1 757,974 + Xcc-8004.813.1 0.22 -0.1 757,974 + Xcc-8004.813.1 0.22 +0.4
Or see this region's nucleotide sequence