Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4578.1

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4576.1 and Xcc-8004.4577.1 are separated by 73 nucleotidesXcc-8004.4577.1 and Xcc-8004.4578.1 are separated by 25 nucleotidesXcc-8004.4578.1 and Xcc-8004.4581.1 are separated by 516 nucleotides Xcc-8004.4576.1: Xcc-8004.4576.1 - ATP synthase F0 sector subunit c, at 4,370,449 to 4,370,751 Xcc-8004.4576.1 Xcc-8004.4577.1: Xcc-8004.4577.1 - ATP synthase F0 sector subunit a (EC 3.6.3.14), at 4,370,825 to 4,371,625 Xcc-8004.4577.1 Xcc-8004.4578.1: Xcc-8004.4578.1 - FIG048548: ATP synthase protein I2, at 4,371,651 to 4,372,016 Xcc-8004.4578.1 Xcc-8004.4581.1: Xcc-8004.4581.1 - FIG01210264: hypothetical protein, at 4,372,533 to 4,373,345 Xcc-8004.4581.1 Position (kb) 4371 4372 4373Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4371.943 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.945 kb on - strand, within Xcc-8004.4578.1at 4371.949 kb on - strand, within Xcc-8004.4578.1at 4371.949 kb on - strand, within Xcc-8004.4578.1at 4371.949 kb on - strand, within Xcc-8004.4578.1at 4371.949 kb on - strand, within Xcc-8004.4578.1at 4371.949 kb on - strand, within Xcc-8004.4578.1at 4371.949 kb on - strand, within Xcc-8004.4578.1at 4371.949 kb on - strand, within Xcc-8004.4578.1at 4371.949 kb on - strand, within Xcc-8004.4578.1at 4371.949 kb on - strand, within Xcc-8004.4578.1at 4371.949 kb on - strand, within Xcc-8004.4578.1at 4371.965 kb on - strand, within Xcc-8004.4578.1at 4372.018 kb on - strandat 4372.024 kb on - strandat 4372.024 kb on - strandat 4372.079 kb on - strandat 4372.126 kb on - strandat 4372.126 kb on - strandat 4372.240 kb on + strandat 4372.240 kb on + strandat 4372.240 kb on + strandat 4372.241 kb on - strandat 4372.241 kb on - strandat 4372.241 kb on - strandat 4372.272 kb on + strandat 4372.368 kb on + strandat 4372.368 kb on + strandat 4372.368 kb on + strandat 4372.369 kb on - strandat 4372.369 kb on - strandat 4372.369 kb on - strandat 4372.420 kb on + strandat 4372.420 kb on + strandat 4372.420 kb on + strandat 4372.421 kb on - strandat 4372.440 kb on + strandat 4372.475 kb on + strandat 4372.475 kb on + strandat 4372.481 kb on + strandat 4372.482 kb on - strandat 4372.511 kb on + strandat 4372.511 kb on + strandat 4372.511 kb on + strandat 4372.511 kb on + strandat 4372.520 kb on + strandat 4372.521 kb on - strandat 4372.521 kb on - strandat 4372.581 kb on + strandat 4372.581 kb on + strandat 4372.581 kb on + strandat 4372.582 kb on - strandat 4372.582 kb on - strandat 4372.582 kb on - strandat 4372.582 kb on - strandat 4372.582 kb on - strandat 4372.582 kb on - strandat 4372.582 kb on - strandat 4372.582 kb on - strandat 4372.607 kb on + strandat 4372.608 kb on - strandat 4372.608 kb on - strandat 4372.608 kb on - strandat 4372.797 kb on + strand, within Xcc-8004.4581.1at 4372.798 kb on - strand, within Xcc-8004.4581.1at 4372.798 kb on - strand, within Xcc-8004.4581.1at 4372.806 kb on + strand, within Xcc-8004.4581.1at 4372.806 kb on + strand, within Xcc-8004.4581.1at 4372.807 kb on - strand, within Xcc-8004.4581.1at 4372.807 kb on - strand, within Xcc-8004.4581.1at 4372.807 kb on - strand, within Xcc-8004.4581.1at 4372.807 kb on - strand, within Xcc-8004.4581.1at 4372.899 kb on + strand, within Xcc-8004.4581.1at 4372.899 kb on + strand, within Xcc-8004.4581.1at 4372.900 kb on - strand, within Xcc-8004.4581.1at 4372.900 kb on - strand, within Xcc-8004.4581.1at 4372.920 kb on + strand, within Xcc-8004.4581.1at 4372.920 kb on + strand, within Xcc-8004.4581.1at 4372.920 kb on + strand, within Xcc-8004.4581.1at 4372.920 kb on + strand, within Xcc-8004.4581.1at 4372.920 kb on + strand, within Xcc-8004.4581.1at 4372.920 kb on + strand, within Xcc-8004.4581.1at 4372.921 kb on - strand, within Xcc-8004.4581.1at 4372.921 kb on - strand, within Xcc-8004.4581.1at 4372.921 kb on - strand, within Xcc-8004.4581.1at 4372.921 kb on - strand, within Xcc-8004.4581.1at 4372.921 kb on - strand, within Xcc-8004.4581.1at 4372.921 kb on - strand, within Xcc-8004.4581.1at 4372.921 kb on - strand, within Xcc-8004.4581.1at 4372.921 kb on - strand, within Xcc-8004.4581.1at 4372.921 kb on - strand, within Xcc-8004.4581.1at 4372.921 kb on - strand, within Xcc-8004.4581.1at 4372.926 kb on + strand, within Xcc-8004.4581.1at 4372.926 kb on + strand, within Xcc-8004.4581.1at 4372.926 kb on + strand, within Xcc-8004.4581.1at 4372.926 kb on + strand, within Xcc-8004.4581.1at 4372.980 kb on + strand, within Xcc-8004.4581.1at 4373.004 kb on + strand, within Xcc-8004.4581.1at 4373.005 kb on - strand, within Xcc-8004.4581.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
4,371,943 - Xcc-8004.4578.1 0.80 -2.0
4,371,945 - Xcc-8004.4578.1 0.80 -1.2
4,371,945 - Xcc-8004.4578.1 0.80 -2.5
4,371,945 - Xcc-8004.4578.1 0.80 -1.8
4,371,945 - Xcc-8004.4578.1 0.80 -0.8
4,371,945 - Xcc-8004.4578.1 0.80 -2.4
4,371,945 - Xcc-8004.4578.1 0.80 +0.2
4,371,945 - Xcc-8004.4578.1 0.80 -0.9
4,371,945 - Xcc-8004.4578.1 0.80 +0.2
4,371,945 - Xcc-8004.4578.1 0.80 -0.3
4,371,945 - Xcc-8004.4578.1 0.80 +0.7
4,371,945 - Xcc-8004.4578.1 0.80 -1.5
4,371,945 - Xcc-8004.4578.1 0.80 -2.2
4,371,945 - Xcc-8004.4578.1 0.80 -2.5
4,371,945 - Xcc-8004.4578.1 0.80 +0.8
4,371,945 - Xcc-8004.4578.1 0.80 -0.6
4,371,945 - Xcc-8004.4578.1 0.80 -0.4
4,371,945 - Xcc-8004.4578.1 0.80 -0.0
4,371,945 - Xcc-8004.4578.1 0.80 -0.9
4,371,945 - Xcc-8004.4578.1 0.80 -0.4
4,371,945 - Xcc-8004.4578.1 0.80 -1.6
4,371,945 - Xcc-8004.4578.1 0.80 -2.5
4,371,945 - Xcc-8004.4578.1 0.80 +1.6
4,371,949 - Xcc-8004.4578.1 0.81 -0.5
4,371,949 - Xcc-8004.4578.1 0.81 -1.9
4,371,949 - Xcc-8004.4578.1 0.81 -0.8
4,371,949 - Xcc-8004.4578.1 0.81 -0.1
4,371,949 - Xcc-8004.4578.1 0.81 -0.3
4,371,949 - Xcc-8004.4578.1 0.81 -1.3
4,371,949 - Xcc-8004.4578.1 0.81 -0.9
4,371,949 - Xcc-8004.4578.1 0.81 +1.0
4,371,949 - Xcc-8004.4578.1 0.81 -2.8
4,371,949 - Xcc-8004.4578.1 0.81 +0.7
4,371,965 - Xcc-8004.4578.1 0.86 -0.6
4,372,018 - -1.1
4,372,024 - -3.1
4,372,024 - -0.9
4,372,079 - +1.9
4,372,126 - -0.4
4,372,126 - -0.1
4,372,240 + -3.0
4,372,240 + +0.1
4,372,240 + -3.0
4,372,241 - +1.9
4,372,241 - +1.4
4,372,241 - +1.4
4,372,272 + +1.1
4,372,368 + +1.4
4,372,368 + +0.8
4,372,368 + -3.2
4,372,369 - +1.0
4,372,369 - +1.9
4,372,369 - +0.7
4,372,420 + +4.7
4,372,420 + -1.5
4,372,420 + +0.4
4,372,421 - +0.4
4,372,440 + +0.8
4,372,475 + +1.4
4,372,475 + +1.2
4,372,481 + -2.3
4,372,482 - +0.6
4,372,511 + +0.6
4,372,511 + -0.0
4,372,511 + -2.3
4,372,511 + +0.6
4,372,520 + +1.2
4,372,521 - +0.5
4,372,521 - -1.2
4,372,581 + +0.7
4,372,581 + -0.3
4,372,581 + -1.3
4,372,582 - -2.1
4,372,582 - +2.1
4,372,582 - +0.3
4,372,582 - -1.9
4,372,582 - -0.1
4,372,582 - +0.9
4,372,582 - +0.0
4,372,582 - +0.1
4,372,607 + -1.9
4,372,608 - +0.6
4,372,608 - +2.1
4,372,608 - -2.0
4,372,797 + Xcc-8004.4581.1 0.32 -2.5
4,372,798 - Xcc-8004.4581.1 0.33 -0.3
4,372,798 - Xcc-8004.4581.1 0.33 -1.5
4,372,806 + Xcc-8004.4581.1 0.34 +1.9
4,372,806 + Xcc-8004.4581.1 0.34 -2.7
4,372,807 - Xcc-8004.4581.1 0.34 -0.6
4,372,807 - Xcc-8004.4581.1 0.34 -2.9
4,372,807 - Xcc-8004.4581.1 0.34 -2.0
4,372,807 - Xcc-8004.4581.1 0.34 -0.5
4,372,899 + Xcc-8004.4581.1 0.45 +0.5
4,372,899 + Xcc-8004.4581.1 0.45 +1.7
4,372,900 - Xcc-8004.4581.1 0.45 +0.2
4,372,900 - Xcc-8004.4581.1 0.45 +0.2
4,372,920 + Xcc-8004.4581.1 0.48 -1.5
4,372,920 + Xcc-8004.4581.1 0.48 +0.5
4,372,920 + Xcc-8004.4581.1 0.48 -1.5
4,372,920 + Xcc-8004.4581.1 0.48 +0.5
4,372,920 + Xcc-8004.4581.1 0.48 -0.7
4,372,920 + Xcc-8004.4581.1 0.48 -1.9
4,372,921 - Xcc-8004.4581.1 0.48 +0.4
4,372,921 - Xcc-8004.4581.1 0.48 -1.9
4,372,921 - Xcc-8004.4581.1 0.48 -0.5
4,372,921 - Xcc-8004.4581.1 0.48 -1.1
4,372,921 - Xcc-8004.4581.1 0.48 +2.7
4,372,921 - Xcc-8004.4581.1 0.48 -1.1
4,372,921 - Xcc-8004.4581.1 0.48 +0.7
4,372,921 - Xcc-8004.4581.1 0.48 -0.1
4,372,921 - Xcc-8004.4581.1 0.48 -1.9
4,372,921 - Xcc-8004.4581.1 0.48 -3.4
4,372,926 + Xcc-8004.4581.1 0.48 -0.8
4,372,926 + Xcc-8004.4581.1 0.48 -2.6
4,372,926 + Xcc-8004.4581.1 0.48 -0.7
4,372,926 + Xcc-8004.4581.1 0.48 +1.0
4,372,980 + Xcc-8004.4581.1 0.55 -1.0
4,373,004 + Xcc-8004.4581.1 0.58 +1.1
4,373,005 - Xcc-8004.4581.1 0.58 -2.6

Or see this region's nucleotide sequence