Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.359.1 and Xcc-8004.360.1 overlap by 4 nucleotides Xcc-8004.360.1 and Xcc-8004.361.1 overlap by 4 nucleotides Xcc-8004.361.1 and Xcc-8004.362.1 overlap by 4 nucleotides Xcc-8004.362.1 and Xcc-8004.363.1 overlap by 4 nucleotides
Xcc-8004.359.1: Xcc-8004.359.1 - Nucleoside-diphosphate-sugar epimerases, at 344,130 to 345,551
Xcc-8004.359.1
Xcc-8004.360.1: Xcc-8004.360.1 - 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase, at 345,548 to 346,039
Xcc-8004.360.1
Xcc-8004.361.1: Xcc-8004.361.1 - FIG023937: hypothetical protein in ureide degradation cluster, at 346,036 to 346,431
Xcc-8004.361.1
Xcc-8004.362.1: Xcc-8004.362.1 - Uricase (urate oxidase) (EC 1.7.3.3), at 346,428 to 347,318
Xcc-8004.362.1
Xcc-8004.363.1: Xcc-8004.363.1 - Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44), at 347,315 to 348,571
Xcc-8004.363.1
Position (kb) 346
347 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 345.163 kb on + strand, within Xcc-8004.359.1 at 345.164 kb on - strand, within Xcc-8004.359.1 at 345.164 kb on - strand, within Xcc-8004.359.1 at 345.164 kb on - strand, within Xcc-8004.359.1 at 345.316 kb on + strand, within Xcc-8004.359.1 at 345.316 kb on + strand, within Xcc-8004.359.1 at 345.316 kb on + strand, within Xcc-8004.359.1 at 345.316 kb on + strand, within Xcc-8004.359.1 at 345.316 kb on + strand, within Xcc-8004.359.1 at 345.316 kb on + strand, within Xcc-8004.359.1 at 345.316 kb on + strand, within Xcc-8004.359.1 at 345.316 kb on + strand, within Xcc-8004.359.1 at 345.317 kb on - strand, within Xcc-8004.359.1 at 345.372 kb on - strand, within Xcc-8004.359.1 at 345.372 kb on - strand, within Xcc-8004.359.1 at 345.445 kb on + strand at 345.445 kb on + strand at 345.445 kb on + strand at 345.445 kb on + strand at 345.446 kb on - strand at 345.446 kb on - strand at 345.446 kb on - strand at 345.446 kb on - strand at 345.891 kb on + strand, within Xcc-8004.360.1 at 345.891 kb on + strand, within Xcc-8004.360.1 at 345.892 kb on - strand, within Xcc-8004.360.1 at 345.892 kb on - strand, within Xcc-8004.360.1 at 346.092 kb on + strand, within Xcc-8004.361.1 at 346.266 kb on - strand, within Xcc-8004.361.1 at 346.361 kb on + strand, within Xcc-8004.361.1 at 346.361 kb on + strand, within Xcc-8004.361.1 at 346.361 kb on + strand, within Xcc-8004.361.1 at 346.362 kb on - strand, within Xcc-8004.361.1 at 346.362 kb on - strand, within Xcc-8004.361.1 at 346.699 kb on + strand, within Xcc-8004.362.1 at 346.700 kb on - strand, within Xcc-8004.362.1 at 346.739 kb on - strand, within Xcc-8004.362.1 at 346.741 kb on + strand, within Xcc-8004.362.1 at 346.741 kb on + strand, within Xcc-8004.362.1 at 346.742 kb on - strand, within Xcc-8004.362.1 at 346.742 kb on - strand, within Xcc-8004.362.1 at 346.759 kb on + strand, within Xcc-8004.362.1 at 346.760 kb on - strand, within Xcc-8004.362.1 at 346.760 kb on - strand, within Xcc-8004.362.1 at 346.760 kb on - strand, within Xcc-8004.362.1 at 346.834 kb on + strand, within Xcc-8004.362.1 at 346.834 kb on + strand, within Xcc-8004.362.1 at 346.835 kb on - strand, within Xcc-8004.362.1 at 346.835 kb on - strand, within Xcc-8004.362.1 at 346.868 kb on + strand, within Xcc-8004.362.1 at 346.869 kb on - strand, within Xcc-8004.362.1 at 346.869 kb on - strand, within Xcc-8004.362.1 at 346.927 kb on + strand, within Xcc-8004.362.1 at 347.096 kb on - strand, within Xcc-8004.362.1 at 347.101 kb on + strand, within Xcc-8004.362.1 at 347.102 kb on - strand, within Xcc-8004.362.1 at 347.222 kb on - strand, within Xcc-8004.362.1 at 347.222 kb on - strand, within Xcc-8004.362.1 at 347.312 kb on + strand at 347.313 kb on - strand at 347.382 kb on + strand at 347.382 kb on + strand at 347.382 kb on + strand at 347.383 kb on - strand at 347.383 kb on - strand at 347.383 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 345,163 + Xcc-8004.359.1 0.73 -0.1 345,164 - Xcc-8004.359.1 0.73 +0.6 345,164 - Xcc-8004.359.1 0.73 -2.1 345,164 - Xcc-8004.359.1 0.73 -2.5 345,316 + Xcc-8004.359.1 0.83 +1.3 345,316 + Xcc-8004.359.1 0.83 +0.6 345,316 + Xcc-8004.359.1 0.83 +3.7 345,316 + Xcc-8004.359.1 0.83 -1.7 345,316 + Xcc-8004.359.1 0.83 +0.4 345,316 + Xcc-8004.359.1 0.83 +0.2 345,316 + Xcc-8004.359.1 0.83 -0.2 345,316 + Xcc-8004.359.1 0.83 -0.9 345,317 - Xcc-8004.359.1 0.83 -1.1 345,372 - Xcc-8004.359.1 0.87 -0.9 345,372 - Xcc-8004.359.1 0.87 -0.6 345,445 + -1.7 345,445 + +0.6 345,445 + -1.4 345,445 + +0.2 345,446 - -3.1 345,446 - -1.2 345,446 - +1.7 345,446 - +0.2 345,891 + Xcc-8004.360.1 0.70 -1.3 345,891 + Xcc-8004.360.1 0.70 -0.1 345,892 - Xcc-8004.360.1 0.70 -1.3 345,892 - Xcc-8004.360.1 0.70 +2.0 346,092 + Xcc-8004.361.1 0.14 -0.8 346,266 - Xcc-8004.361.1 0.58 -0.6 346,361 + Xcc-8004.361.1 0.82 -0.6 346,361 + Xcc-8004.361.1 0.82 -1.0 346,361 + Xcc-8004.361.1 0.82 -1.5 346,362 - Xcc-8004.361.1 0.82 -0.9 346,362 - Xcc-8004.361.1 0.82 -0.9 346,699 + Xcc-8004.362.1 0.30 -0.8 346,700 - Xcc-8004.362.1 0.31 +0.7 346,739 - Xcc-8004.362.1 0.35 +2.2 346,741 + Xcc-8004.362.1 0.35 -2.1 346,741 + Xcc-8004.362.1 0.35 +0.5 346,742 - Xcc-8004.362.1 0.35 -0.7 346,742 - Xcc-8004.362.1 0.35 -0.3 346,759 + Xcc-8004.362.1 0.37 -0.3 346,760 - Xcc-8004.362.1 0.37 +0.6 346,760 - Xcc-8004.362.1 0.37 +2.4 346,760 - Xcc-8004.362.1 0.37 -1.3 346,834 + Xcc-8004.362.1 0.46 +0.2 346,834 + Xcc-8004.362.1 0.46 +0.6 346,835 - Xcc-8004.362.1 0.46 -0.2 346,835 - Xcc-8004.362.1 0.46 -2.4 346,868 + Xcc-8004.362.1 0.49 +0.2 346,869 - Xcc-8004.362.1 0.49 +0.8 346,869 - Xcc-8004.362.1 0.49 -0.4 346,927 + Xcc-8004.362.1 0.56 -0.8 347,096 - Xcc-8004.362.1 0.75 -0.8 347,101 + Xcc-8004.362.1 0.76 +1.5 347,102 - Xcc-8004.362.1 0.76 +3.4 347,222 - Xcc-8004.362.1 0.89 -0.2 347,222 - Xcc-8004.362.1 0.89 -0.5 347,312 + +1.0 347,313 - -1.7 347,382 + -2.9 347,382 + -0.3 347,382 + -1.9 347,383 - +0.5 347,383 - +1.9 347,383 - -1.0
Or see this region's nucleotide sequence