Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.996.1 and Xcc-8004.997.1 are separated by 185 nucleotides Xcc-8004.997.1 and Xcc-8004.998.1 are separated by 1 nucleotides Xcc-8004.998.1 and Xcc-8004.999.1 are separated by 267 nucleotides Xcc-8004.999.1 and Xcc-8004.1000.1 overlap by 4 nucleotides
Xcc-8004.996.1: Xcc-8004.996.1 - Rhamnogalacturonate lyase precursor (EC 4.2.2.-), at 943,400 to 944,101
Xcc-8004.996.1
Xcc-8004.997.1: Xcc-8004.997.1 - Possible GRAM domain, at 944,287 to 944,658
Xcc-8004.997.1
Xcc-8004.998.1: Xcc-8004.998.1 - putative; ORF located using Glimmer/Genemark, at 944,660 to 945,202
Xcc-8004.998.1
Xcc-8004.999.1: Xcc-8004.999.1 - putative; ORF located using Glimmer/Genemark, at 945,470 to 945,889
Xcc-8004.999.1
Xcc-8004.1000.1: Xcc-8004.1000.1 - putative; ORF located using Glimmer/Genemark, at 945,886 to 946,452
Xcc-8004.1000.1
Position (kb) 944
945
946 Strain fitness (log2 ratio) -2
-1
0
1
2 at 943.734 kb on + strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.764 kb on + strand, within Xcc-8004.996.1 at 943.764 kb on + strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.767 kb on + strand, within Xcc-8004.996.1 at 943.768 kb on - strand, within Xcc-8004.996.1 at 944.034 kb on + strand at 944.035 kb on - strand at 944.127 kb on + strand at 944.375 kb on - strand, within Xcc-8004.997.1 at 944.375 kb on - strand, within Xcc-8004.997.1 at 944.375 kb on - strand, within Xcc-8004.997.1 at 944.375 kb on - strand, within Xcc-8004.997.1 at 945.069 kb on + strand, within Xcc-8004.998.1 at 945.070 kb on - strand, within Xcc-8004.998.1 at 945.097 kb on - strand, within Xcc-8004.998.1 at 945.483 kb on - strand at 945.483 kb on - strand at 945.483 kb on - strand at 945.521 kb on + strand, within Xcc-8004.999.1 at 945.521 kb on + strand, within Xcc-8004.999.1 at 945.521 kb on + strand, within Xcc-8004.999.1 at 945.535 kb on - strand, within Xcc-8004.999.1 at 945.558 kb on + strand, within Xcc-8004.999.1 at 945.559 kb on - strand, within Xcc-8004.999.1 at 945.559 kb on - strand, within Xcc-8004.999.1 at 945.603 kb on + strand, within Xcc-8004.999.1 at 945.604 kb on - strand, within Xcc-8004.999.1 at 945.604 kb on - strand, within Xcc-8004.999.1 at 945.741 kb on + strand, within Xcc-8004.999.1 at 945.982 kb on + strand, within Xcc-8004.1000.1 at 945.983 kb on - strand, within Xcc-8004.1000.1 at 945.983 kb on - strand, within Xcc-8004.1000.1 at 946.046 kb on + strand, within Xcc-8004.1000.1 at 946.046 kb on + strand, within Xcc-8004.1000.1 at 946.046 kb on + strand, within Xcc-8004.1000.1 at 946.047 kb on - strand, within Xcc-8004.1000.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 943,734 + Xcc-8004.996.1 0.48 +0.3 943,735 - Xcc-8004.996.1 0.48 +0.3 943,735 - Xcc-8004.996.1 0.48 -0.9 943,735 - Xcc-8004.996.1 0.48 -1.0 943,735 - Xcc-8004.996.1 0.48 +1.1 943,764 + Xcc-8004.996.1 0.52 -0.9 943,764 + Xcc-8004.996.1 0.52 -0.8 943,765 - Xcc-8004.996.1 0.52 +0.5 943,765 - Xcc-8004.996.1 0.52 -0.0 943,765 - Xcc-8004.996.1 0.52 +1.0 943,765 - Xcc-8004.996.1 0.52 +0.4 943,767 + Xcc-8004.996.1 0.52 -0.3 943,768 - Xcc-8004.996.1 0.52 +0.4 944,034 + -0.7 944,035 - -0.0 944,127 + -1.0 944,375 - Xcc-8004.997.1 0.24 -0.7 944,375 - Xcc-8004.997.1 0.24 -0.4 944,375 - Xcc-8004.997.1 0.24 -1.0 944,375 - Xcc-8004.997.1 0.24 -0.2 945,069 + Xcc-8004.998.1 0.75 -0.6 945,070 - Xcc-8004.998.1 0.76 -1.0 945,097 - Xcc-8004.998.1 0.80 -0.5 945,483 - -1.4 945,483 - -0.5 945,483 - -2.1 945,521 + Xcc-8004.999.1 0.12 -0.2 945,521 + Xcc-8004.999.1 0.12 -1.7 945,521 + Xcc-8004.999.1 0.12 -0.5 945,535 - Xcc-8004.999.1 0.15 -0.6 945,558 + Xcc-8004.999.1 0.21 -0.7 945,559 - Xcc-8004.999.1 0.21 +1.1 945,559 - Xcc-8004.999.1 0.21 -1.5 945,603 + Xcc-8004.999.1 0.32 -0.2 945,604 - Xcc-8004.999.1 0.32 +0.4 945,604 - Xcc-8004.999.1 0.32 -0.1 945,741 + Xcc-8004.999.1 0.65 -0.2 945,982 + Xcc-8004.1000.1 0.17 +0.7 945,983 - Xcc-8004.1000.1 0.17 +0.7 945,983 - Xcc-8004.1000.1 0.17 -1.2 946,046 + Xcc-8004.1000.1 0.28 -0.4 946,046 + Xcc-8004.1000.1 0.28 -2.2 946,046 + Xcc-8004.1000.1 0.28 +1.9 946,047 - Xcc-8004.1000.1 0.28 -0.2
Or see this region's nucleotide sequence