Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4938.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4935.1 and Xcc-8004.4936.1 are separated by 401 nucleotidesXcc-8004.4936.1 and Xcc-8004.4937.1 are separated by 30 nucleotidesXcc-8004.4937.1 and Xcc-8004.4938.1 are separated by 3 nucleotidesXcc-8004.4938.1 and Xcc-8004.4939.1 are separated by 182 nucleotides Xcc-8004.4935.1: Xcc-8004.4935.1 - FIG01213190: hypothetical protein, at 4,692,306 to 4,692,488 Xcc-8004.4935.1 Xcc-8004.4936.1: Xcc-8004.4936.1 - FIG01212169: hypothetical protein, at 4,692,890 to 4,693,171 Xcc-8004.4936.1 Xcc-8004.4937.1: Xcc-8004.4937.1 - FIG01211718: hypothetical protein, at 4,693,202 to 4,693,480 Xcc-8004.4937.1 Xcc-8004.4938.1: Xcc-8004.4938.1 - FIG01210954: hypothetical protein, at 4,693,484 to 4,694,197 Xcc-8004.4938.1 Xcc-8004.4939.1: Xcc-8004.4939.1 - hypothetical protein, at 4,694,380 to 4,695,270 Xcc-8004.4939.1 Position (kb) 4693 4694 4695Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4692.507 kb on + strandat 4692.651 kb on - strandat 4692.775 kb on + strandat 4692.775 kb on + strandat 4692.776 kb on - strandat 4692.779 kb on + strandat 4692.779 kb on + strandat 4692.838 kb on + strandat 4692.838 kb on + strandat 4692.838 kb on + strandat 4692.839 kb on - strandat 4692.839 kb on - strandat 4692.839 kb on - strandat 4692.839 kb on - strandat 4692.848 kb on + strandat 4692.849 kb on - strandat 4692.849 kb on - strandat 4692.849 kb on - strandat 4692.849 kb on - strandat 4692.849 kb on - strandat 4692.871 kb on - strandat 4692.918 kb on + strandat 4692.918 kb on + strandat 4692.918 kb on + strandat 4692.918 kb on + strandat 4692.919 kb on - strand, within Xcc-8004.4936.1at 4692.919 kb on - strand, within Xcc-8004.4936.1at 4692.919 kb on - strand, within Xcc-8004.4936.1at 4692.919 kb on - strand, within Xcc-8004.4936.1at 4692.919 kb on - strand, within Xcc-8004.4936.1at 4692.919 kb on - strand, within Xcc-8004.4936.1at 4692.919 kb on - strand, within Xcc-8004.4936.1at 4692.919 kb on - strand, within Xcc-8004.4936.1at 4693.022 kb on + strand, within Xcc-8004.4936.1at 4693.022 kb on + strand, within Xcc-8004.4936.1at 4693.022 kb on + strand, within Xcc-8004.4936.1at 4693.022 kb on + strand, within Xcc-8004.4936.1at 4693.022 kb on + strand, within Xcc-8004.4936.1at 4693.022 kb on + strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.118 kb on + strand, within Xcc-8004.4936.1at 4693.118 kb on + strand, within Xcc-8004.4936.1at 4693.118 kb on + strand, within Xcc-8004.4936.1at 4693.119 kb on - strand, within Xcc-8004.4936.1at 4693.195 kb on + strandat 4693.195 kb on + strandat 4693.323 kb on + strand, within Xcc-8004.4937.1at 4693.434 kb on + strand, within Xcc-8004.4937.1at 4693.434 kb on + strand, within Xcc-8004.4937.1at 4693.435 kb on - strand, within Xcc-8004.4937.1at 4693.435 kb on - strand, within Xcc-8004.4937.1at 4693.521 kb on + strandat 4693.521 kb on + strandat 4693.522 kb on - strandat 4693.522 kb on - strandat 4693.530 kb on + strandat 4693.539 kb on + strandat 4693.556 kb on + strand, within Xcc-8004.4938.1at 4693.556 kb on + strand, within Xcc-8004.4938.1at 4693.556 kb on + strand, within Xcc-8004.4938.1at 4693.556 kb on + strand, within Xcc-8004.4938.1at 4693.556 kb on + strand, within Xcc-8004.4938.1at 4693.557 kb on - strand, within Xcc-8004.4938.1at 4693.557 kb on - strand, within Xcc-8004.4938.1at 4693.557 kb on - strand, within Xcc-8004.4938.1at 4693.557 kb on - strand, within Xcc-8004.4938.1at 4693.557 kb on - strand, within Xcc-8004.4938.1at 4693.558 kb on + strand, within Xcc-8004.4938.1at 4693.558 kb on + strand, within Xcc-8004.4938.1at 4693.558 kb on + strand, within Xcc-8004.4938.1at 4693.558 kb on + strand, within Xcc-8004.4938.1at 4693.558 kb on + strand, within Xcc-8004.4938.1at 4693.558 kb on + strand, within Xcc-8004.4938.1at 4693.558 kb on + strand, within Xcc-8004.4938.1at 4693.558 kb on + strand, within Xcc-8004.4938.1at 4693.558 kb on + strand, within Xcc-8004.4938.1at 4693.559 kb on - strand, within Xcc-8004.4938.1at 4693.559 kb on - strand, within Xcc-8004.4938.1at 4693.559 kb on - strand, within Xcc-8004.4938.1at 4693.559 kb on - strand, within Xcc-8004.4938.1at 4693.559 kb on - strand, within Xcc-8004.4938.1at 4693.559 kb on - strand, within Xcc-8004.4938.1at 4693.618 kb on + strand, within Xcc-8004.4938.1at 4693.619 kb on - strand, within Xcc-8004.4938.1at 4694.022 kb on - strand, within Xcc-8004.4938.1at 4694.022 kb on - strand, within Xcc-8004.4938.1at 4694.022 kb on - strand, within Xcc-8004.4938.1at 4694.342 kb on + strandat 4694.343 kb on - strandat 4694.343 kb on - strandat 4694.343 kb on - strandat 4694.343 kb on - strandat 4694.343 kb on - strandat 4694.651 kb on + strand, within Xcc-8004.4939.1at 4694.651 kb on + strand, within Xcc-8004.4939.1at 4694.651 kb on + strand, within Xcc-8004.4939.1at 4694.651 kb on + strand, within Xcc-8004.4939.1at 4694.651 kb on + strand, within Xcc-8004.4939.1at 4694.651 kb on + strand, within Xcc-8004.4939.1at 4694.652 kb on - strand, within Xcc-8004.4939.1at 4694.652 kb on - strand, within Xcc-8004.4939.1at 4694.652 kb on - strand, within Xcc-8004.4939.1at 4694.652 kb on - strand, within Xcc-8004.4939.1at 4694.652 kb on - strand, within Xcc-8004.4939.1at 4694.652 kb on - strand, within Xcc-8004.4939.1at 4694.652 kb on - strand, within Xcc-8004.4939.1at 4694.652 kb on - strand, within Xcc-8004.4939.1at 4694.652 kb on - strand, within Xcc-8004.4939.1at 4694.652 kb on - strand, within Xcc-8004.4939.1at 4694.652 kb on - strand, within Xcc-8004.4939.1at 4694.652 kb on - strand, within Xcc-8004.4939.1at 4694.652 kb on - strand, within Xcc-8004.4939.1at 4694.722 kb on + strand, within Xcc-8004.4939.1at 4695.031 kb on + strand, within Xcc-8004.4939.1at 4695.031 kb on + strand, within Xcc-8004.4939.1at 4695.031 kb on + strand, within Xcc-8004.4939.1at 4695.031 kb on + strand, within Xcc-8004.4939.1at 4695.032 kb on - strand, within Xcc-8004.4939.1at 4695.032 kb on - strand, within Xcc-8004.4939.1at 4695.032 kb on - strand, within Xcc-8004.4939.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,692,507 + +0.1
4,692,651 - +0.5
4,692,775 + +0.2
4,692,775 + +0.6
4,692,776 - +0.3
4,692,779 + +0.1
4,692,779 + -1.0
4,692,838 + -1.0
4,692,838 + +0.8
4,692,838 + -1.1
4,692,839 - +0.1
4,692,839 - +0.5
4,692,839 - -0.3
4,692,839 - -1.6
4,692,848 + -0.9
4,692,849 - -0.3
4,692,849 - +1.1
4,692,849 - -0.2
4,692,849 - -0.2
4,692,849 - +0.6
4,692,871 - +0.5
4,692,918 + +1.9
4,692,918 + +0.5
4,692,918 + -1.9
4,692,918 + -0.4
4,692,919 - Xcc-8004.4936.1 0.10 -3.5
4,692,919 - Xcc-8004.4936.1 0.10 -0.7
4,692,919 - Xcc-8004.4936.1 0.10 -2.2
4,692,919 - Xcc-8004.4936.1 0.10 +0.5
4,692,919 - Xcc-8004.4936.1 0.10 -0.1
4,692,919 - Xcc-8004.4936.1 0.10 +0.5
4,692,919 - Xcc-8004.4936.1 0.10 +1.0
4,692,919 - Xcc-8004.4936.1 0.10 -0.1
4,693,022 + Xcc-8004.4936.1 0.47 +0.4
4,693,022 + Xcc-8004.4936.1 0.47 +0.5
4,693,022 + Xcc-8004.4936.1 0.47 +0.3
4,693,022 + Xcc-8004.4936.1 0.47 -0.6
4,693,022 + Xcc-8004.4936.1 0.47 +0.1
4,693,022 + Xcc-8004.4936.1 0.47 +0.6
4,693,023 - Xcc-8004.4936.1 0.47 +0.3
4,693,023 - Xcc-8004.4936.1 0.47 +0.3
4,693,023 - Xcc-8004.4936.1 0.47 -1.2
4,693,023 - Xcc-8004.4936.1 0.47 -0.6
4,693,023 - Xcc-8004.4936.1 0.47 -1.3
4,693,023 - Xcc-8004.4936.1 0.47 -0.7
4,693,023 - Xcc-8004.4936.1 0.47 -1.5
4,693,023 - Xcc-8004.4936.1 0.47 +0.0
4,693,118 + Xcc-8004.4936.1 0.81 -0.5
4,693,118 + Xcc-8004.4936.1 0.81 -0.6
4,693,118 + Xcc-8004.4936.1 0.81 +0.1
4,693,119 - Xcc-8004.4936.1 0.81 +0.9
4,693,195 + -0.5
4,693,195 + -0.7
4,693,323 + Xcc-8004.4937.1 0.43 +0.1
4,693,434 + Xcc-8004.4937.1 0.83 -0.9
4,693,434 + Xcc-8004.4937.1 0.83 -0.8
4,693,435 - Xcc-8004.4937.1 0.84 -1.1
4,693,435 - Xcc-8004.4937.1 0.84 -0.0
4,693,521 + +0.3
4,693,521 + +0.1
4,693,522 - +0.3
4,693,522 - -0.4
4,693,530 + -1.0
4,693,539 + -0.7
4,693,556 + Xcc-8004.4938.1 0.10 -1.5
4,693,556 + Xcc-8004.4938.1 0.10 -1.7
4,693,556 + Xcc-8004.4938.1 0.10 -0.1
4,693,556 + Xcc-8004.4938.1 0.10 -0.5
4,693,556 + Xcc-8004.4938.1 0.10 -0.1
4,693,557 - Xcc-8004.4938.1 0.10 -0.8
4,693,557 - Xcc-8004.4938.1 0.10 -0.5
4,693,557 - Xcc-8004.4938.1 0.10 +3.2
4,693,557 - Xcc-8004.4938.1 0.10 +0.4
4,693,557 - Xcc-8004.4938.1 0.10 -0.1
4,693,558 + Xcc-8004.4938.1 0.10 +0.7
4,693,558 + Xcc-8004.4938.1 0.10 -0.6
4,693,558 + Xcc-8004.4938.1 0.10 -2.0
4,693,558 + Xcc-8004.4938.1 0.10 +0.7
4,693,558 + Xcc-8004.4938.1 0.10 +1.9
4,693,558 + Xcc-8004.4938.1 0.10 +0.0
4,693,558 + Xcc-8004.4938.1 0.10 -0.4
4,693,558 + Xcc-8004.4938.1 0.10 -1.2
4,693,558 + Xcc-8004.4938.1 0.10 +0.7
4,693,559 - Xcc-8004.4938.1 0.11 -0.3
4,693,559 - Xcc-8004.4938.1 0.11 -0.1
4,693,559 - Xcc-8004.4938.1 0.11 -0.7
4,693,559 - Xcc-8004.4938.1 0.11 -2.2
4,693,559 - Xcc-8004.4938.1 0.11 -0.8
4,693,559 - Xcc-8004.4938.1 0.11 +0.8
4,693,618 + Xcc-8004.4938.1 0.19 -1.2
4,693,619 - Xcc-8004.4938.1 0.19 -1.5
4,694,022 - Xcc-8004.4938.1 0.75 -0.4
4,694,022 - Xcc-8004.4938.1 0.75 +0.7
4,694,022 - Xcc-8004.4938.1 0.75 +0.8
4,694,342 + +1.7
4,694,343 - -0.0
4,694,343 - +1.1
4,694,343 - +0.9
4,694,343 - -0.9
4,694,343 - +0.8
4,694,651 + Xcc-8004.4939.1 0.30 +1.1
4,694,651 + Xcc-8004.4939.1 0.30 -1.7
4,694,651 + Xcc-8004.4939.1 0.30 -0.8
4,694,651 + Xcc-8004.4939.1 0.30 -0.0
4,694,651 + Xcc-8004.4939.1 0.30 -0.0
4,694,651 + Xcc-8004.4939.1 0.30 -1.7
4,694,652 - Xcc-8004.4939.1 0.31 -0.1
4,694,652 - Xcc-8004.4939.1 0.31 -0.5
4,694,652 - Xcc-8004.4939.1 0.31 -0.2
4,694,652 - Xcc-8004.4939.1 0.31 +2.3
4,694,652 - Xcc-8004.4939.1 0.31 -0.2
4,694,652 - Xcc-8004.4939.1 0.31 -0.2
4,694,652 - Xcc-8004.4939.1 0.31 -0.1
4,694,652 - Xcc-8004.4939.1 0.31 -0.5
4,694,652 - Xcc-8004.4939.1 0.31 +0.1
4,694,652 - Xcc-8004.4939.1 0.31 -0.9
4,694,652 - Xcc-8004.4939.1 0.31 -0.2
4,694,652 - Xcc-8004.4939.1 0.31 -0.3
4,694,652 - Xcc-8004.4939.1 0.31 -0.6
4,694,722 + Xcc-8004.4939.1 0.38 +0.1
4,695,031 + Xcc-8004.4939.1 0.73 +0.2
4,695,031 + Xcc-8004.4939.1 0.73 +0.0
4,695,031 + Xcc-8004.4939.1 0.73 -0.6
4,695,031 + Xcc-8004.4939.1 0.73 +0.3
4,695,032 - Xcc-8004.4939.1 0.73 -0.6
4,695,032 - Xcc-8004.4939.1 0.73 +1.0
4,695,032 - Xcc-8004.4939.1 0.73 +1.3

Or see this region's nucleotide sequence