Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4931.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4930.1 and Xcc-8004.4931.1 are separated by 68 nucleotidesXcc-8004.4931.1 and Xcc-8004.4933.1 are separated by 289 nucleotides Xcc-8004.4930.1: Xcc-8004.4930.1 - RNA-2',3'-PO4:RNA-5'-OH ligase, at 4,687,735 to 4,688,955 Xcc-8004.4930.1 Xcc-8004.4931.1: Xcc-8004.4931.1 - FIG01210460: hypothetical protein, at 4,689,024 to 4,689,953 Xcc-8004.4931.1 Xcc-8004.4933.1: Xcc-8004.4933.1 - Hydrolase or peptidase, at 4,690,243 to 4,691,112 Xcc-8004.4933.1 Position (kb) 4689 4690Strain fitness (log2 ratio) -2 -1 0 1 2at 4688.103 kb on + strand, within Xcc-8004.4930.1at 4688.194 kb on - strand, within Xcc-8004.4930.1at 4688.329 kb on + strand, within Xcc-8004.4930.1at 4688.329 kb on + strand, within Xcc-8004.4930.1at 4688.329 kb on + strand, within Xcc-8004.4930.1at 4688.330 kb on - strand, within Xcc-8004.4930.1at 4688.330 kb on - strand, within Xcc-8004.4930.1at 4688.330 kb on - strand, within Xcc-8004.4930.1at 4688.330 kb on - strand, within Xcc-8004.4930.1at 4688.330 kb on - strand, within Xcc-8004.4930.1at 4688.330 kb on - strand, within Xcc-8004.4930.1at 4688.437 kb on + strand, within Xcc-8004.4930.1at 4688.438 kb on - strand, within Xcc-8004.4930.1at 4688.438 kb on - strand, within Xcc-8004.4930.1at 4688.438 kb on - strand, within Xcc-8004.4930.1at 4688.438 kb on - strand, within Xcc-8004.4930.1at 4688.438 kb on - strand, within Xcc-8004.4930.1at 4688.438 kb on - strand, within Xcc-8004.4930.1at 4688.467 kb on + strand, within Xcc-8004.4930.1at 4688.468 kb on - strand, within Xcc-8004.4930.1at 4688.575 kb on + strand, within Xcc-8004.4930.1at 4688.575 kb on + strand, within Xcc-8004.4930.1at 4688.575 kb on + strand, within Xcc-8004.4930.1at 4688.575 kb on + strand, within Xcc-8004.4930.1at 4688.575 kb on + strand, within Xcc-8004.4930.1at 4688.575 kb on + strand, within Xcc-8004.4930.1at 4688.576 kb on - strand, within Xcc-8004.4930.1at 4688.576 kb on - strand, within Xcc-8004.4930.1at 4688.576 kb on - strand, within Xcc-8004.4930.1at 4688.576 kb on - strand, within Xcc-8004.4930.1at 4688.680 kb on - strand, within Xcc-8004.4930.1at 4688.685 kb on + strand, within Xcc-8004.4930.1at 4688.685 kb on + strand, within Xcc-8004.4930.1at 4688.685 kb on + strand, within Xcc-8004.4930.1at 4688.686 kb on - strand, within Xcc-8004.4930.1at 4688.686 kb on - strand, within Xcc-8004.4930.1at 4688.686 kb on - strand, within Xcc-8004.4930.1at 4688.686 kb on - strand, within Xcc-8004.4930.1at 4688.689 kb on + strand, within Xcc-8004.4930.1at 4688.689 kb on + strand, within Xcc-8004.4930.1at 4688.689 kb on + strand, within Xcc-8004.4930.1at 4688.689 kb on + strand, within Xcc-8004.4930.1at 4688.689 kb on + strand, within Xcc-8004.4930.1at 4688.689 kb on + strand, within Xcc-8004.4930.1at 4688.689 kb on + strand, within Xcc-8004.4930.1at 4688.690 kb on - strand, within Xcc-8004.4930.1at 4688.690 kb on - strand, within Xcc-8004.4930.1at 4688.690 kb on - strand, within Xcc-8004.4930.1at 4688.866 kb on + strandat 4688.866 kb on + strandat 4688.866 kb on + strandat 4688.866 kb on + strandat 4688.866 kb on + strandat 4689.120 kb on + strand, within Xcc-8004.4931.1at 4689.165 kb on + strand, within Xcc-8004.4931.1at 4689.165 kb on + strand, within Xcc-8004.4931.1at 4689.165 kb on + strand, within Xcc-8004.4931.1at 4689.165 kb on + strand, within Xcc-8004.4931.1at 4689.165 kb on + strand, within Xcc-8004.4931.1at 4689.165 kb on + strand, within Xcc-8004.4931.1at 4689.165 kb on + strand, within Xcc-8004.4931.1at 4689.166 kb on - strand, within Xcc-8004.4931.1at 4689.166 kb on - strand, within Xcc-8004.4931.1at 4689.166 kb on - strand, within Xcc-8004.4931.1at 4689.166 kb on - strand, within Xcc-8004.4931.1at 4689.166 kb on - strand, within Xcc-8004.4931.1at 4689.166 kb on - strand, within Xcc-8004.4931.1at 4689.389 kb on - strand, within Xcc-8004.4931.1at 4689.412 kb on - strand, within Xcc-8004.4931.1at 4689.441 kb on + strand, within Xcc-8004.4931.1at 4689.441 kb on + strand, within Xcc-8004.4931.1at 4689.442 kb on - strand, within Xcc-8004.4931.1at 4689.442 kb on - strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.462 kb on + strand, within Xcc-8004.4931.1at 4689.462 kb on + strand, within Xcc-8004.4931.1at 4689.463 kb on - strand, within Xcc-8004.4931.1at 4689.463 kb on - strand, within Xcc-8004.4931.1at 4689.474 kb on + strand, within Xcc-8004.4931.1at 4689.474 kb on + strand, within Xcc-8004.4931.1at 4689.487 kb on - strand, within Xcc-8004.4931.1at 4689.660 kb on + strand, within Xcc-8004.4931.1at 4689.660 kb on + strand, within Xcc-8004.4931.1at 4689.681 kb on + strand, within Xcc-8004.4931.1at 4689.723 kb on + strand, within Xcc-8004.4931.1at 4689.723 kb on + strand, within Xcc-8004.4931.1at 4689.723 kb on + strand, within Xcc-8004.4931.1at 4689.724 kb on - strand, within Xcc-8004.4931.1at 4689.724 kb on - strand, within Xcc-8004.4931.1at 4689.724 kb on - strand, within Xcc-8004.4931.1at 4689.729 kb on + strand, within Xcc-8004.4931.1at 4689.729 kb on + strand, within Xcc-8004.4931.1at 4689.729 kb on + strand, within Xcc-8004.4931.1at 4689.729 kb on + strand, within Xcc-8004.4931.1at 4689.730 kb on - strand, within Xcc-8004.4931.1at 4689.730 kb on - strand, within Xcc-8004.4931.1at 4689.739 kb on - strand, within Xcc-8004.4931.1at 4689.750 kb on + strand, within Xcc-8004.4931.1at 4689.751 kb on - strand, within Xcc-8004.4931.1at 4689.952 kb on - strandat 4689.952 kb on - strandat 4689.964 kb on + strandat 4689.964 kb on + strandat 4689.965 kb on - strandat 4689.965 kb on - strandat 4689.965 kb on - strandat 4689.965 kb on - strandat 4689.965 kb on - strandat 4689.970 kb on + strandat 4689.970 kb on + strandat 4689.971 kb on - strandat 4689.971 kb on - strandat 4689.971 kb on - strandat 4690.102 kb on - strandat 4690.102 kb on - strandat 4690.244 kb on + strandat 4690.430 kb on + strand, within Xcc-8004.4933.1at 4690.430 kb on + strand, within Xcc-8004.4933.1at 4690.523 kb on + strand, within Xcc-8004.4933.1at 4690.523 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.593 kb on - strand, within Xcc-8004.4933.1at 4690.593 kb on - strand, within Xcc-8004.4933.1at 4690.593 kb on - strand, within Xcc-8004.4933.1at 4690.649 kb on + strand, within Xcc-8004.4933.1at 4690.778 kb on + strand, within Xcc-8004.4933.1at 4690.778 kb on + strand, within Xcc-8004.4933.1at 4690.787 kb on + strand, within Xcc-8004.4933.1at 4690.787 kb on + strand, within Xcc-8004.4933.1at 4690.787 kb on + strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.826 kb on + strand, within Xcc-8004.4933.1at 4690.826 kb on + strand, within Xcc-8004.4933.1at 4690.826 kb on + strand, within Xcc-8004.4933.1at 4690.827 kb on - strand, within Xcc-8004.4933.1at 4690.827 kb on - strand, within Xcc-8004.4933.1at 4690.851 kb on - strand, within Xcc-8004.4933.1at 4690.851 kb on - strand, within Xcc-8004.4933.1at 4690.910 kb on + strand, within Xcc-8004.4933.1at 4690.910 kb on + strand, within Xcc-8004.4933.1at 4690.910 kb on + strand, within Xcc-8004.4933.1at 4690.910 kb on + strand, within Xcc-8004.4933.1at 4690.928 kb on - strand, within Xcc-8004.4933.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,688,103 + Xcc-8004.4930.1 0.30 +1.0
4,688,194 - Xcc-8004.4930.1 0.38 -1.5
4,688,329 + Xcc-8004.4930.1 0.49 +0.6
4,688,329 + Xcc-8004.4930.1 0.49 +0.6
4,688,329 + Xcc-8004.4930.1 0.49 +0.7
4,688,330 - Xcc-8004.4930.1 0.49 -0.1
4,688,330 - Xcc-8004.4930.1 0.49 +0.7
4,688,330 - Xcc-8004.4930.1 0.49 -1.1
4,688,330 - Xcc-8004.4930.1 0.49 +0.6
4,688,330 - Xcc-8004.4930.1 0.49 +0.9
4,688,330 - Xcc-8004.4930.1 0.49 +0.2
4,688,437 + Xcc-8004.4930.1 0.57 +0.6
4,688,438 - Xcc-8004.4930.1 0.58 -0.5
4,688,438 - Xcc-8004.4930.1 0.58 -0.3
4,688,438 - Xcc-8004.4930.1 0.58 -0.2
4,688,438 - Xcc-8004.4930.1 0.58 +0.1
4,688,438 - Xcc-8004.4930.1 0.58 -0.0
4,688,438 - Xcc-8004.4930.1 0.58 -0.5
4,688,467 + Xcc-8004.4930.1 0.60 +0.7
4,688,468 - Xcc-8004.4930.1 0.60 -1.5
4,688,575 + Xcc-8004.4930.1 0.69 -1.6
4,688,575 + Xcc-8004.4930.1 0.69 -0.7
4,688,575 + Xcc-8004.4930.1 0.69 -1.1
4,688,575 + Xcc-8004.4930.1 0.69 +0.4
4,688,575 + Xcc-8004.4930.1 0.69 -0.1
4,688,575 + Xcc-8004.4930.1 0.69 +0.1
4,688,576 - Xcc-8004.4930.1 0.69 +0.0
4,688,576 - Xcc-8004.4930.1 0.69 +0.4
4,688,576 - Xcc-8004.4930.1 0.69 +0.9
4,688,576 - Xcc-8004.4930.1 0.69 -1.0
4,688,680 - Xcc-8004.4930.1 0.77 +0.7
4,688,685 + Xcc-8004.4930.1 0.78 -1.2
4,688,685 + Xcc-8004.4930.1 0.78 -0.3
4,688,685 + Xcc-8004.4930.1 0.78 +1.7
4,688,686 - Xcc-8004.4930.1 0.78 +0.5
4,688,686 - Xcc-8004.4930.1 0.78 +0.2
4,688,686 - Xcc-8004.4930.1 0.78 -0.2
4,688,686 - Xcc-8004.4930.1 0.78 -0.4
4,688,689 + Xcc-8004.4930.1 0.78 +1.1
4,688,689 + Xcc-8004.4930.1 0.78 +1.1
4,688,689 + Xcc-8004.4930.1 0.78 +0.5
4,688,689 + Xcc-8004.4930.1 0.78 -0.0
4,688,689 + Xcc-8004.4930.1 0.78 -1.4
4,688,689 + Xcc-8004.4930.1 0.78 -1.0
4,688,689 + Xcc-8004.4930.1 0.78 +0.3
4,688,690 - Xcc-8004.4930.1 0.78 +0.1
4,688,690 - Xcc-8004.4930.1 0.78 -0.9
4,688,690 - Xcc-8004.4930.1 0.78 -1.6
4,688,866 + +0.8
4,688,866 + -0.0
4,688,866 + -0.4
4,688,866 + -1.3
4,688,866 + -1.4
4,689,120 + Xcc-8004.4931.1 0.10 -0.4
4,689,165 + Xcc-8004.4931.1 0.15 +0.6
4,689,165 + Xcc-8004.4931.1 0.15 -0.2
4,689,165 + Xcc-8004.4931.1 0.15 -1.2
4,689,165 + Xcc-8004.4931.1 0.15 -0.6
4,689,165 + Xcc-8004.4931.1 0.15 +1.6
4,689,165 + Xcc-8004.4931.1 0.15 +1.1
4,689,165 + Xcc-8004.4931.1 0.15 -0.1
4,689,166 - Xcc-8004.4931.1 0.15 -0.5
4,689,166 - Xcc-8004.4931.1 0.15 -2.6
4,689,166 - Xcc-8004.4931.1 0.15 -1.0
4,689,166 - Xcc-8004.4931.1 0.15 +1.5
4,689,166 - Xcc-8004.4931.1 0.15 -0.1
4,689,166 - Xcc-8004.4931.1 0.15 -0.6
4,689,389 - Xcc-8004.4931.1 0.39 -2.0
4,689,412 - Xcc-8004.4931.1 0.42 -0.4
4,689,441 + Xcc-8004.4931.1 0.45 -0.9
4,689,441 + Xcc-8004.4931.1 0.45 -0.6
4,689,442 - Xcc-8004.4931.1 0.45 +0.2
4,689,442 - Xcc-8004.4931.1 0.45 +0.2
4,689,444 + Xcc-8004.4931.1 0.45 +0.0
4,689,444 + Xcc-8004.4931.1 0.45 +1.8
4,689,444 + Xcc-8004.4931.1 0.45 -1.3
4,689,444 + Xcc-8004.4931.1 0.45 +0.5
4,689,444 + Xcc-8004.4931.1 0.45 -0.4
4,689,444 + Xcc-8004.4931.1 0.45 +2.3
4,689,444 + Xcc-8004.4931.1 0.45 +1.7
4,689,445 - Xcc-8004.4931.1 0.45 -1.7
4,689,445 - Xcc-8004.4931.1 0.45 +1.7
4,689,445 - Xcc-8004.4931.1 0.45 +0.0
4,689,445 - Xcc-8004.4931.1 0.45 +0.3
4,689,445 - Xcc-8004.4931.1 0.45 +0.3
4,689,445 - Xcc-8004.4931.1 0.45 -2.4
4,689,445 - Xcc-8004.4931.1 0.45 +0.8
4,689,462 + Xcc-8004.4931.1 0.47 +0.0
4,689,462 + Xcc-8004.4931.1 0.47 +0.6
4,689,463 - Xcc-8004.4931.1 0.47 -1.0
4,689,463 - Xcc-8004.4931.1 0.47 -1.7
4,689,474 + Xcc-8004.4931.1 0.48 -1.1
4,689,474 + Xcc-8004.4931.1 0.48 +0.3
4,689,487 - Xcc-8004.4931.1 0.50 -0.9
4,689,660 + Xcc-8004.4931.1 0.68 -0.1
4,689,660 + Xcc-8004.4931.1 0.68 -0.5
4,689,681 + Xcc-8004.4931.1 0.71 -0.3
4,689,723 + Xcc-8004.4931.1 0.75 +0.8
4,689,723 + Xcc-8004.4931.1 0.75 -0.9
4,689,723 + Xcc-8004.4931.1 0.75 +0.0
4,689,724 - Xcc-8004.4931.1 0.75 -0.4
4,689,724 - Xcc-8004.4931.1 0.75 -0.1
4,689,724 - Xcc-8004.4931.1 0.75 +0.6
4,689,729 + Xcc-8004.4931.1 0.76 +0.2
4,689,729 + Xcc-8004.4931.1 0.76 -0.2
4,689,729 + Xcc-8004.4931.1 0.76 +2.0
4,689,729 + Xcc-8004.4931.1 0.76 -0.5
4,689,730 - Xcc-8004.4931.1 0.76 +0.9
4,689,730 - Xcc-8004.4931.1 0.76 -0.2
4,689,739 - Xcc-8004.4931.1 0.77 -0.8
4,689,750 + Xcc-8004.4931.1 0.78 +0.0
4,689,751 - Xcc-8004.4931.1 0.78 -0.7
4,689,952 - +0.8
4,689,952 - +0.8
4,689,964 + +0.4
4,689,964 + +1.0
4,689,965 - -0.2
4,689,965 - -1.2
4,689,965 - -0.9
4,689,965 - +0.1
4,689,965 - -1.7
4,689,970 + +1.0
4,689,970 + -0.8
4,689,971 - -1.7
4,689,971 - -0.2
4,689,971 - +0.0
4,690,102 - -0.3
4,690,102 - -1.5
4,690,244 + +0.2
4,690,430 + Xcc-8004.4933.1 0.21 +1.5
4,690,430 + Xcc-8004.4933.1 0.21 -0.6
4,690,523 + Xcc-8004.4933.1 0.32 -0.4
4,690,523 + Xcc-8004.4933.1 0.32 +1.4
4,690,592 + Xcc-8004.4933.1 0.40 +0.3
4,690,592 + Xcc-8004.4933.1 0.40 +2.6
4,690,592 + Xcc-8004.4933.1 0.40 +0.8
4,690,592 + Xcc-8004.4933.1 0.40 +0.1
4,690,592 + Xcc-8004.4933.1 0.40 +0.7
4,690,592 + Xcc-8004.4933.1 0.40 -0.2
4,690,592 + Xcc-8004.4933.1 0.40 -0.3
4,690,592 + Xcc-8004.4933.1 0.40 -1.0
4,690,593 - Xcc-8004.4933.1 0.40 -1.2
4,690,593 - Xcc-8004.4933.1 0.40 -0.4
4,690,593 - Xcc-8004.4933.1 0.40 -0.9
4,690,649 + Xcc-8004.4933.1 0.47 +0.6
4,690,778 + Xcc-8004.4933.1 0.61 -0.7
4,690,778 + Xcc-8004.4933.1 0.61 -0.5
4,690,787 + Xcc-8004.4933.1 0.63 -0.3
4,690,787 + Xcc-8004.4933.1 0.63 -0.0
4,690,787 + Xcc-8004.4933.1 0.63 +0.1
4,690,788 - Xcc-8004.4933.1 0.63 +0.1
4,690,788 - Xcc-8004.4933.1 0.63 -0.1
4,690,788 - Xcc-8004.4933.1 0.63 -0.1
4,690,788 - Xcc-8004.4933.1 0.63 -0.6
4,690,788 - Xcc-8004.4933.1 0.63 +0.1
4,690,826 + Xcc-8004.4933.1 0.67 -1.1
4,690,826 + Xcc-8004.4933.1 0.67 -1.4
4,690,826 + Xcc-8004.4933.1 0.67 +0.5
4,690,827 - Xcc-8004.4933.1 0.67 +1.7
4,690,827 - Xcc-8004.4933.1 0.67 -0.8
4,690,851 - Xcc-8004.4933.1 0.70 +0.4
4,690,851 - Xcc-8004.4933.1 0.70 +2.4
4,690,910 + Xcc-8004.4933.1 0.77 -0.8
4,690,910 + Xcc-8004.4933.1 0.77 -0.3
4,690,910 + Xcc-8004.4933.1 0.77 -0.1
4,690,910 + Xcc-8004.4933.1 0.77 +0.5
4,690,928 - Xcc-8004.4933.1 0.79 +0.2

Or see this region's nucleotide sequence