Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.169.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.168.1 and Xcc-8004.169.1 are separated by 119 nucleotidesXcc-8004.169.1 and Xcc-8004.170.1 are separated by 235 nucleotides Xcc-8004.168.1: Xcc-8004.168.1 - hypothetical protein, at 160,710 to 161,405 Xcc-8004.168.1 Xcc-8004.169.1: Xcc-8004.169.1 - hypothetical protein, at 161,525 to 161,977 Xcc-8004.169.1 Xcc-8004.170.1: Xcc-8004.170.1 - Mobile element protein, at 162,213 to 163,193 Xcc-8004.170.1 Position (kb) 161 162Strain fitness (log2 ratio) -2 -1 0 1 2at 160.527 kb on + strandat 160.527 kb on + strandat 160.527 kb on + strandat 160.528 kb on - strandat 160.528 kb on - strandat 160.558 kb on + strandat 160.590 kb on - strandat 160.596 kb on - strandat 160.637 kb on - strandat 160.648 kb on + strandat 160.685 kb on + strandat 160.685 kb on + strandat 160.686 kb on - strandat 160.686 kb on - strandat 160.824 kb on + strand, within Xcc-8004.168.1at 160.824 kb on + strand, within Xcc-8004.168.1at 160.824 kb on + strand, within Xcc-8004.168.1at 160.825 kb on - strand, within Xcc-8004.168.1at 160.825 kb on - strand, within Xcc-8004.168.1at 160.827 kb on + strand, within Xcc-8004.168.1at 160.828 kb on - strand, within Xcc-8004.168.1at 160.842 kb on - strand, within Xcc-8004.168.1at 160.847 kb on + strand, within Xcc-8004.168.1at 160.847 kb on + strand, within Xcc-8004.168.1at 160.851 kb on + strand, within Xcc-8004.168.1at 160.851 kb on + strand, within Xcc-8004.168.1at 160.851 kb on + strand, within Xcc-8004.168.1at 160.851 kb on + strand, within Xcc-8004.168.1at 160.852 kb on - strand, within Xcc-8004.168.1at 160.852 kb on - strand, within Xcc-8004.168.1at 160.853 kb on + strand, within Xcc-8004.168.1at 160.853 kb on + strand, within Xcc-8004.168.1at 160.853 kb on + strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.919 kb on + strand, within Xcc-8004.168.1at 160.919 kb on + strand, within Xcc-8004.168.1at 160.920 kb on - strand, within Xcc-8004.168.1at 160.926 kb on + strand, within Xcc-8004.168.1at 160.926 kb on + strand, within Xcc-8004.168.1at 160.927 kb on - strand, within Xcc-8004.168.1at 161.011 kb on + strand, within Xcc-8004.168.1at 161.012 kb on - strand, within Xcc-8004.168.1at 161.129 kb on + strand, within Xcc-8004.168.1at 161.129 kb on + strand, within Xcc-8004.168.1at 161.129 kb on + strand, within Xcc-8004.168.1at 161.129 kb on + strand, within Xcc-8004.168.1at 161.130 kb on - strand, within Xcc-8004.168.1at 161.130 kb on - strand, within Xcc-8004.168.1at 161.147 kb on + strand, within Xcc-8004.168.1at 161.148 kb on - strand, within Xcc-8004.168.1at 161.155 kb on + strand, within Xcc-8004.168.1at 161.273 kb on + strand, within Xcc-8004.168.1at 161.274 kb on - strand, within Xcc-8004.168.1at 161.292 kb on + strand, within Xcc-8004.168.1at 161.292 kb on + strand, within Xcc-8004.168.1at 161.292 kb on + strand, within Xcc-8004.168.1at 161.292 kb on + strand, within Xcc-8004.168.1at 161.292 kb on + strand, within Xcc-8004.168.1at 161.292 kb on + strand, within Xcc-8004.168.1at 161.292 kb on + strand, within Xcc-8004.168.1at 161.292 kb on + strand, within Xcc-8004.168.1at 161.292 kb on + strand, within Xcc-8004.168.1at 161.292 kb on + strand, within Xcc-8004.168.1at 161.292 kb on + strand, within Xcc-8004.168.1at 161.292 kb on + strand, within Xcc-8004.168.1at 161.293 kb on - strand, within Xcc-8004.168.1at 161.293 kb on - strand, within Xcc-8004.168.1at 161.293 kb on - strand, within Xcc-8004.168.1at 161.293 kb on - strand, within Xcc-8004.168.1at 161.293 kb on - strand, within Xcc-8004.168.1at 161.293 kb on - strand, within Xcc-8004.168.1at 161.311 kb on + strand, within Xcc-8004.168.1at 161.311 kb on + strand, within Xcc-8004.168.1at 161.311 kb on + strand, within Xcc-8004.168.1at 161.311 kb on + strand, within Xcc-8004.168.1at 161.311 kb on + strand, within Xcc-8004.168.1at 161.311 kb on + strand, within Xcc-8004.168.1at 161.312 kb on - strand, within Xcc-8004.168.1at 161.312 kb on - strand, within Xcc-8004.168.1at 161.312 kb on - strand, within Xcc-8004.168.1at 161.371 kb on + strandat 161.372 kb on - strandat 161.372 kb on - strandat 161.393 kb on - strandat 161.393 kb on - strandat 161.471 kb on + strandat 161.472 kb on - strandat 161.479 kb on - strandat 161.493 kb on + strandat 161.494 kb on - strandat 161.495 kb on + strandat 161.495 kb on + strandat 161.495 kb on + strandat 161.495 kb on + strandat 161.496 kb on - strandat 161.508 kb on + strandat 161.508 kb on + strandat 161.564 kb on + strandat 161.564 kb on + strandat 161.565 kb on - strandat 161.565 kb on - strandat 161.565 kb on - strandat 161.565 kb on - strandat 161.565 kb on - strandat 161.568 kb on + strandat 161.568 kb on + strandat 161.569 kb on - strandat 161.569 kb on - strandat 161.569 kb on - strandat 161.569 kb on - strandat 161.582 kb on - strand, within Xcc-8004.169.1at 161.596 kb on + strand, within Xcc-8004.169.1at 161.596 kb on + strand, within Xcc-8004.169.1at 161.649 kb on - strand, within Xcc-8004.169.1at 161.650 kb on + strand, within Xcc-8004.169.1at 161.650 kb on + strand, within Xcc-8004.169.1at 161.651 kb on - strand, within Xcc-8004.169.1at 161.706 kb on + strand, within Xcc-8004.169.1at 161.707 kb on - strand, within Xcc-8004.169.1at 161.719 kb on - strand, within Xcc-8004.169.1at 161.724 kb on + strand, within Xcc-8004.169.1at 161.725 kb on - strand, within Xcc-8004.169.1at 161.783 kb on + strand, within Xcc-8004.169.1at 161.783 kb on + strand, within Xcc-8004.169.1at 161.783 kb on + strand, within Xcc-8004.169.1at 161.787 kb on + strand, within Xcc-8004.169.1at 161.787 kb on + strand, within Xcc-8004.169.1at 161.788 kb on - strand, within Xcc-8004.169.1at 161.842 kb on - strand, within Xcc-8004.169.1at 161.842 kb on - strand, within Xcc-8004.169.1at 161.850 kb on + strand, within Xcc-8004.169.1at 161.850 kb on + strand, within Xcc-8004.169.1at 161.850 kb on + strand, within Xcc-8004.169.1at 161.891 kb on - strand, within Xcc-8004.169.1at 161.923 kb on - strand, within Xcc-8004.169.1at 161.923 kb on - strand, within Xcc-8004.169.1at 161.923 kb on - strand, within Xcc-8004.169.1at 161.935 kb on + strandat 161.935 kb on + strandat 161.949 kb on - strandat 161.975 kb on + strandat 161.985 kb on + strandat 161.988 kb on - strandat 162.014 kb on + strandat 162.026 kb on + strandat 162.026 kb on + strandat 162.026 kb on + strandat 162.034 kb on + strandat 162.034 kb on + strandat 162.075 kb on + strandat 162.075 kb on + strandat 162.085 kb on + strandat 162.086 kb on - strandat 162.086 kb on - strandat 162.086 kb on - strandat 162.090 kb on - strandat 162.096 kb on - strandat 162.096 kb on - strandat 162.137 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
160,527 + -0.3
160,527 + +0.3
160,527 + +0.7
160,528 - -0.9
160,528 - -2.1
160,558 + -0.2
160,590 - +1.3
160,596 - -0.2
160,637 - +0.5
160,648 + +2.1
160,685 + +0.0
160,685 + +0.8
160,686 - +0.5
160,686 - -1.4
160,824 + Xcc-8004.168.1 0.16 -1.3
160,824 + Xcc-8004.168.1 0.16 +0.7
160,824 + Xcc-8004.168.1 0.16 +0.2
160,825 - Xcc-8004.168.1 0.17 -0.8
160,825 - Xcc-8004.168.1 0.17 -0.5
160,827 + Xcc-8004.168.1 0.17 -1.3
160,828 - Xcc-8004.168.1 0.17 +0.4
160,842 - Xcc-8004.168.1 0.19 -0.9
160,847 + Xcc-8004.168.1 0.20 +0.2
160,847 + Xcc-8004.168.1 0.20 +0.2
160,851 + Xcc-8004.168.1 0.20 +1.0
160,851 + Xcc-8004.168.1 0.20 -0.3
160,851 + Xcc-8004.168.1 0.20 -0.5
160,851 + Xcc-8004.168.1 0.20 +0.3
160,852 - Xcc-8004.168.1 0.20 +1.6
160,852 - Xcc-8004.168.1 0.20 -2.6
160,853 + Xcc-8004.168.1 0.21 -0.4
160,853 + Xcc-8004.168.1 0.21 -0.2
160,853 + Xcc-8004.168.1 0.21 -0.0
160,854 - Xcc-8004.168.1 0.21 +0.7
160,854 - Xcc-8004.168.1 0.21 -1.1
160,854 - Xcc-8004.168.1 0.21 +0.2
160,854 - Xcc-8004.168.1 0.21 +0.0
160,854 - Xcc-8004.168.1 0.21 -0.4
160,854 - Xcc-8004.168.1 0.21 -0.2
160,919 + Xcc-8004.168.1 0.30 +1.0
160,919 + Xcc-8004.168.1 0.30 +0.8
160,920 - Xcc-8004.168.1 0.30 +0.4
160,926 + Xcc-8004.168.1 0.31 -1.0
160,926 + Xcc-8004.168.1 0.31 -0.9
160,927 - Xcc-8004.168.1 0.31 +0.2
161,011 + Xcc-8004.168.1 0.43 +0.1
161,012 - Xcc-8004.168.1 0.43 +0.2
161,129 + Xcc-8004.168.1 0.60 +0.2
161,129 + Xcc-8004.168.1 0.60 -0.5
161,129 + Xcc-8004.168.1 0.60 -0.6
161,129 + Xcc-8004.168.1 0.60 -0.1
161,130 - Xcc-8004.168.1 0.60 -1.8
161,130 - Xcc-8004.168.1 0.60 -0.2
161,147 + Xcc-8004.168.1 0.63 -0.6
161,148 - Xcc-8004.168.1 0.63 -0.0
161,155 + Xcc-8004.168.1 0.64 +0.1
161,273 + Xcc-8004.168.1 0.81 +0.8
161,274 - Xcc-8004.168.1 0.81 -2.0
161,292 + Xcc-8004.168.1 0.84 -0.7
161,292 + Xcc-8004.168.1 0.84 +0.6
161,292 + Xcc-8004.168.1 0.84 +0.7
161,292 + Xcc-8004.168.1 0.84 -1.2
161,292 + Xcc-8004.168.1 0.84 +2.3
161,292 + Xcc-8004.168.1 0.84 +0.1
161,292 + Xcc-8004.168.1 0.84 -1.2
161,292 + Xcc-8004.168.1 0.84 +0.6
161,292 + Xcc-8004.168.1 0.84 +1.3
161,292 + Xcc-8004.168.1 0.84 +1.1
161,292 + Xcc-8004.168.1 0.84 -1.1
161,292 + Xcc-8004.168.1 0.84 -1.0
161,293 - Xcc-8004.168.1 0.84 +0.4
161,293 - Xcc-8004.168.1 0.84 -0.4
161,293 - Xcc-8004.168.1 0.84 +0.2
161,293 - Xcc-8004.168.1 0.84 +0.8
161,293 - Xcc-8004.168.1 0.84 -1.1
161,293 - Xcc-8004.168.1 0.84 +0.8
161,311 + Xcc-8004.168.1 0.86 -0.2
161,311 + Xcc-8004.168.1 0.86 -0.8
161,311 + Xcc-8004.168.1 0.86 -1.2
161,311 + Xcc-8004.168.1 0.86 -0.6
161,311 + Xcc-8004.168.1 0.86 -0.0
161,311 + Xcc-8004.168.1 0.86 +0.8
161,312 - Xcc-8004.168.1 0.86 -1.3
161,312 - Xcc-8004.168.1 0.86 -0.2
161,312 - Xcc-8004.168.1 0.86 -1.0
161,371 + -0.5
161,372 - +0.5
161,372 - -0.4
161,393 - +0.2
161,393 - +1.6
161,471 + +1.1
161,472 - -1.1
161,479 - +1.6
161,493 + +0.5
161,494 - +0.6
161,495 + -0.1
161,495 + -0.2
161,495 + -1.2
161,495 + +0.8
161,496 - +0.3
161,508 + +0.3
161,508 + +0.9
161,564 + -0.4
161,564 + -1.2
161,565 - -0.0
161,565 - -0.9
161,565 - +0.2
161,565 - -0.4
161,565 - -0.3
161,568 + -0.6
161,568 + +0.9
161,569 - +0.7
161,569 - -0.5
161,569 - -0.4
161,569 - +0.8
161,582 - Xcc-8004.169.1 0.13 +0.1
161,596 + Xcc-8004.169.1 0.16 +0.4
161,596 + Xcc-8004.169.1 0.16 -0.8
161,649 - Xcc-8004.169.1 0.27 +0.1
161,650 + Xcc-8004.169.1 0.28 -0.1
161,650 + Xcc-8004.169.1 0.28 +0.5
161,651 - Xcc-8004.169.1 0.28 +0.1
161,706 + Xcc-8004.169.1 0.40 +0.8
161,707 - Xcc-8004.169.1 0.40 +0.8
161,719 - Xcc-8004.169.1 0.43 -1.3
161,724 + Xcc-8004.169.1 0.44 -0.4
161,725 - Xcc-8004.169.1 0.44 -0.8
161,783 + Xcc-8004.169.1 0.57 -0.5
161,783 + Xcc-8004.169.1 0.57 -1.1
161,783 + Xcc-8004.169.1 0.57 +0.1
161,787 + Xcc-8004.169.1 0.58 -0.4
161,787 + Xcc-8004.169.1 0.58 -0.3
161,788 - Xcc-8004.169.1 0.58 +0.1
161,842 - Xcc-8004.169.1 0.70 +0.1
161,842 - Xcc-8004.169.1 0.70 -0.7
161,850 + Xcc-8004.169.1 0.72 -0.8
161,850 + Xcc-8004.169.1 0.72 -0.1
161,850 + Xcc-8004.169.1 0.72 -0.3
161,891 - Xcc-8004.169.1 0.81 +0.4
161,923 - Xcc-8004.169.1 0.88 -0.5
161,923 - Xcc-8004.169.1 0.88 +0.4
161,923 - Xcc-8004.169.1 0.88 -0.2
161,935 + +0.8
161,935 + -1.1
161,949 - -0.9
161,975 + -0.3
161,985 + +1.4
161,988 - -0.9
162,014 + +0.4
162,026 + -0.2
162,026 + +0.3
162,026 + -0.9
162,034 + +1.2
162,034 + +0.8
162,075 + -1.2
162,075 + +2.4
162,085 + +0.1
162,086 - +1.9
162,086 - +0.7
162,086 - +0.6
162,090 - +0.1
162,096 - +0.4
162,096 - -1.5
162,137 - -1.5

Or see this region's nucleotide sequence